Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:118322322-119582335

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16429 5 118326996 to 118327225 229 CpG island CpG island 16429
Cpgi16430 5 118331208 to 118331448 240 CpG island CpG island 16430
Cpgi16431 5 118331914 to 118332269 355 CpG island CpG island 16431
Gm46942 5 118359909 to 118360405 496 + lncRNA gene predicted gene, 46942
Gm30604 5 118373154 to 118380918 7764 - lncRNA gene predicted gene, 30604
Tssr52896 5 118380484 to 118380502 18 - TSS region transcription start site region 52896
Cpgi16432 5 118380624 to 118381021 397 CpG island CpG island 16432
Cpgi16433 5 118381344 to 118381586 242 CpG island CpG island 16433
Tssr48422 5 118381646 to 118381658 12 + TSS region transcription start site region 48422
Cpgi16434 5 118396257 to 118396496 239 CpG island CpG island 16434
Gm28563 5 118396806 to 118397330 524 - lincRNA gene predicted gene 28563
Gm30657 5 118402792 to 118413581 10789 - lncRNA gene predicted gene, 30657
Tssr48423 5 118404883 to 118404890 7 + TSS region transcription start site region 48423
Tssr52897 5 118413537 to 118413553 16 - TSS region transcription start site region 52897
Gm26455 5 118418727 to 118418818 91 - miRNA gene predicted gene, 26455
Tssr52898 5 118422000 to 118422005 5 - TSS region transcription start site region 52898
Cpgi16435 5 118422652 to 118422860 208 CpG island CpG island 16435
Tssr52899 5 118434816 to 118434848 32 - TSS region transcription start site region 52899
Tssr48424 5 118435840 to 118435848 8 + TSS region transcription start site region 48424
Tssr48425 5 118437485 to 118437495 10 + TSS region transcription start site region 48425
Tssr48426 5 118437510 to 118437518 8 + TSS region transcription start site region 48426
Gm30746 5 118462049 to 118463084 1035 + lncRNA gene predicted gene, 30746
Tssr52900 5 118466469 to 118466485 16 - TSS region transcription start site region 52900
Tssr52901 5 118477750 to 118477778 28 - TSS region transcription start site region 52901
Tssr52902 5 118477793 to 118477806 13 - TSS region transcription start site region 52902
Tssr48427 5 118478580 to 118478591 11 + TSS region transcription start site region 48427
Tssr48428 5 118486950 to 118486994 44 + TSS region transcription start site region 48428
Gm46921 5 118491256 to 118492630 1374 - lncRNA gene predicted gene, 46921
Gm15754 5 118499398 to 118503454 4056 + pseudogene predicted gene 15754
D5Mit407 5 118506247 to 118506341 94 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 407
Cpgi16436 5 118513843 to 118514506 663 CpG island CpG island 16436
Tssr52903 5 118514030 to 118514045 15 - TSS region transcription start site region 52903
Tssr48429 5 118556440 to 118556463 23 + TSS region transcription start site region 48429
Tssr48430 5 118556484 to 118556510 26 + TSS region transcription start site region 48430
Cpgi16437 5 118559379 to 118561786 2407 CpG island CpG island 16437
Tssr48431 5 118560281 to 118560307 26 + TSS region transcription start site region 48431
Tssr48432 5 118560358 to 118560453 95 + TSS region transcription start site region 48432
Tssr48433 5 118560624 to 118560690 66 + TSS region transcription start site region 48433
Med13l 5 118560701 to 118765438 204737 + protein coding gene mediator complex subunit 13-like
Tssr48434 5 118561104 to 118561128 24 + TSS region transcription start site region 48434
Tssr48435 5 118561139 to 118561150 11 + TSS region transcription start site region 48435
Tssr48436 5 118561154 to 118561172 18 + TSS region transcription start site region 48436
Gm43785 5 118561757 to 118563101 1344 - unclassified gene predicted gene 43785
Tssr48437 5 118599168 to 118599172 4 + TSS region transcription start site region 48437
Gm43788 5 118602716 to 118605132 2416 + unclassified gene predicted gene 43788
D5Ertd255e 5 118604870 to 118605118 248 DNA segment DNA segment, Chr 5, ERATO Doi 255, expressed
Tssr48438 5 118614974 to 118614977 3 + TSS region transcription start site region 48438
Gm43275 5 118618294 to 118619313 1019 + unclassified gene predicted gene 43275
Tssr48439 5 118628941 to 118628953 12 + TSS region transcription start site region 48439
Tssr48440 5 118637706 to 118637713 7 + TSS region transcription start site region 48440
Tssr48441 5 118639524 to 118639528 4 + TSS region transcription start site region 48441
Gm43274 5 118644373 to 118649372 4999 + unclassified gene predicted gene 43274
Tssr48442 5 118649591 to 118649601 10 + TSS region transcription start site region 48442
Gm43052 5 118687618 to 118689245 1627 + unclassified gene predicted gene 43052
Gm43051 5 118707402 to 118710079 2677 + unclassified gene predicted gene 43051
Tssr48443 5 118707406 to 118707409 3 + TSS region transcription start site region 48443
Aevm2 5 118725767 to 118725963 196 QTL autoimmune extremity vasculitis in MRL mice 2
D5Mit136 5 118725767 to 118725963 196 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 136
Eae39 5 118725963 to 89271017 -29454946 QTL experimental allergic encephalomyelitis susceptibility 39
Tssr48444 5 118765002 to 118765021 19 + TSS region transcription start site region 48444
Tssr48445 5 118765070 to 118765099 29 + TSS region transcription start site region 48445
Tssr48446 5 118765183 to 118765196 13 + TSS region transcription start site region 48446
Cpgi16438 5 118781480 to 118781882 402 CpG island CpG island 16438
Gm42015 5 118824374 to 118843310 18936 - lncRNA gene predicted gene, 42015
Gm43782 5 118875811 to 118877465 1654 - lincRNA gene predicted gene 43782
Gm43342 5 118928123 to 118935962 7839 + lincRNA gene predicted gene 43342
Cpgi16439 5 118929953 to 118930243 290 CpG island CpG island 16439
Tssr1614 5 118952322 to 118952335 13 + TSS region transcription start site region 1614
4930413E15Rik 5 118952339 to 118961261 8922 + lincRNA gene RIKEN cDNA 4930413E15 gene
Cpgi16440 5 118960589 to 118960780 191 CpG island CpG island 16440
Cpgi16441 5 118981223 to 118981482 259 CpG island CpG island 16441
Gm43784 5 118994561 to 118996996 2435 - unclassified gene predicted gene 43784
Cpgi16442 5 119005927 to 119006429 502 CpG island CpG island 16442
Cpgi16443 5 119009921 to 119010245 324 CpG island CpG island 16443
Gm30895 5 119053626 to 119075293 21667 + lncRNA gene predicted gene, 30895
Gm31034 5 119075634 to 119086806 11172 - lncRNA gene predicted gene, 31034
Tssr52904 5 119080850 to 119080862 12 - TSS region transcription start site region 52904
Cpgi16444 5 119086107 to 119086706 599 CpG island CpG island 16444
1700081H04Rik 5 119108236 to 119114543 6307 + lincRNA gene RIKEN cDNA 1700081H04 gene
Tssr48447 5 119133644 to 119133673 29 + TSS region transcription start site region 48447
Gm31129 5 119133651 to 119138408 4757 + lncRNA gene predicted gene, 31129
Cpgi16445 5 119167918 to 119168109 191 CpG island CpG island 16445
Gm7538 5 119194484 to 119200018 5534 - lincRNA gene predicted gene 7538
Cpgi16446 5 119271089 to 119271430 341 CpG island CpG island 16446
Cpgi16447 5 119279173 to 119279382 209 CpG island CpG island 16447
Gm31190 5 119280244 to 119300425 20181 - lncRNA gene predicted gene, 31190
n-R5s175 5 119297245 to 119297361 116 + rRNA gene nuclear encoded rRNA 5S 175
Tssr48448 5 119322009 to 119322022 13 + TSS region transcription start site region 48448
Gm42016 5 119325999 to 119330526 4527 + lncRNA gene predicted gene, 42016
Tssr48449 5 119326009 to 119326041 32 + TSS region transcription start site region 48449
Cpgi16448 5 119374001 to 119374231 230 CpG island CpG island 16448
Mdq15 5 119440195 to 119440195 0 QTL mammary ductal QTL 15
Cpgi16449 5 119440660 to 119440878 218 CpG island CpG island 16449
Gm31314 5 119518795 to 119527954 9159 - lincRNA gene predicted gene, 31314
Tssr52905 5 119527945 to 119527962 17 - TSS region transcription start site region 52905
Cpgi16450 5 119547090 to 119547381 291 CpG island CpG island 16450
Cpgi16451 5 119563881 to 119564309 428 CpG island CpG island 16451
AW549542 5 119570129 to 119580358 10229 - lncRNA gene expressed sequence AW549542
Tssr52906 5 119570736 to 119570739 3 - TSS region transcription start site region 52906
Tssr52907 5 119580532 to 119580550 18 - TSS region transcription start site region 52907