Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:118110226-118380289

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbxw8 5 118064981 to 118155458 90477 - protein coding gene F-box and WD-40 domain protein 8
Gm26411 5 118148788 to 118148894 106 - snRNA gene predicted gene, 26411
Cpgi16424 5 118154907 to 118155611 704 CpG island CpG island 16424
Tssr48416 5 118154944 to 118154955 11 + TSS region transcription start site region 48416
Tssr52892 5 118155379 to 118155469 90 - TSS region transcription start site region 52892
Gm30522 5 118161138 to 118165023 3885 + lncRNA gene predicted gene, 30522
Cpgi16425 5 118169159 to 118170448 1289 CpG island CpG island 16425
Tssr52893 5 118169585 to 118169589 4 - TSS region transcription start site region 52893
Tssr48417 5 118169712 to 118169743 31 + TSS region transcription start site region 48417
Hrk 5 118169764 to 118189478 19714 + protein coding gene harakiri, BCL2 interacting protein (contains only BH3 domain)
Cpgi16426 5 118171263 to 118172536 1273 CpG island CpG island 16426
Rnft2 5 118190734 to 118245111 54377 - protein coding gene ring finger protein, transmembrane 2
Criq2 5 118194514 to 118194514 0 QTL Citrobacter rodentium infection QTL 2
Gm24050 5 118211053 to 118211342 289 - unclassified non-coding RNA gene predicted gene, 24050
Cpgi16427 5 118214410 to 118214845 435 CpG island CpG island 16427
Tssr52894 5 118232435 to 118232465 30 - TSS region transcription start site region 52894
Cpgi16428 5 118244633 to 118245632 999 CpG island CpG island 16428
Tssr52895 5 118244983 to 118245048 65 - TSS region transcription start site region 52895
Tssr48418 5 118245226 to 118245289 63 + TSS region transcription start site region 48418
2410131K14Rik 5 118245227 to 118263114 17887 + protein coding gene RIKEN cDNA 2410131K14 gene
Tssr48419 5 118245301 to 118245358 57 + TSS region transcription start site region 48419
Tssr48420 5 118245383 to 118245443 60 + TSS region transcription start site region 48420
Gm25076 5 118266449 to 118266580 131 + snoRNA gene predicted gene, 25076
Tssr48421 5 118318967 to 118318972 5 + TSS region transcription start site region 48421
Cpgi16429 5 118326996 to 118327225 229 CpG island CpG island 16429
Cpgi16430 5 118331208 to 118331448 240 CpG island CpG island 16430
Cpgi16431 5 118331914 to 118332269 355 CpG island CpG island 16431
Gm46942 5 118359909 to 118360405 496 + lncRNA gene predicted gene, 46942
Gm30604 5 118373154 to 118380918 7764 - lncRNA gene predicted gene, 30604