Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:117442197-118294326

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq2 5 110105240 to 117955608 7850368 QTL modifier of retinal degeneration QTL 2
Ksr2 5 117414000 to 117775003 361003 + protein coding gene kinase suppressor of ras 2
Gm42013 5 117482507 to 117486260 3753 - lncRNA gene predicted gene, 42013
Tssr52887 5 117484304 to 117484328 24 - TSS region transcription start site region 52887
Cpgi16416 5 117493365 to 117493822 457 CpG island CpG island 16416
Cpgi16417 5 117497057 to 117497428 371 CpG island CpG island 16417
Tssr48394 5 117509800 to 117509807 7 + TSS region transcription start site region 48394
Tssr48395 5 117509942 to 117509954 12 + TSS region transcription start site region 48395
Tssr48396 5 117510243 to 117510250 7 + TSS region transcription start site region 48396
Gm42550 5 117520699 to 117521658 959 + unclassified gene predicted gene 42550
Smmq1 5 117527900 to 117527900 0 QTL soleus muscle mass QTL 1
Tammq2 5 117527900 to 117527900 0 QTL tibialis anterior muscle mass QTL 2
Cpgi16418 5 117555197 to 117555462 265 CpG island CpG island 16418
Tssr48397 5 117659903 to 117659919 16 + TSS region transcription start site region 48397
Tssr48398 5 117769612 to 117769614 2 + TSS region transcription start site region 48398
Tssr48399 5 117781017 to 117781075 58 + TSS region transcription start site region 48399
Nos1 5 117781032 to 117958840 177808 + protein coding gene nitric oxide synthase 1, neuronal
Cpgi16419 5 117841754 to 117842962 1208 CpG island CpG island 16419
Tssr48400 5 117841839 to 117841857 18 + TSS region transcription start site region 48400
Tssr48401 5 117841884 to 117841925 41 + TSS region transcription start site region 48401
Tssr48402 5 117841930 to 117841939 9 + TSS region transcription start site region 48402
Tssr48403 5 117842113 to 117842167 54 + TSS region transcription start site region 48403
Gm30360 5 117857197 to 117879326 22129 - lncRNA gene predicted gene, 30360
Gm37028 5 117872813 to 117872919 106 + unclassified gene predicted gene, 37028
D5Mit188 5 117879630 to 117879777 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 188
Tssr52888 5 117900383 to 117900385 2 - TSS region transcription start site region 52888
Tssr52889 5 117909518 to 117909523 5 - TSS region transcription start site region 52889
Tssr48404 5 117910023 to 117910029 6 + TSS region transcription start site region 48404
D5Mit210a 5 117910948 to 117911226 278 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 210a
D5Mit210b 5 117911019 to 117911226 207 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 210b
D5Mit319 5 117932225 to 117932347 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 319
Gm26995 5 117938208 to 117939673 1465 - antisense lncRNA gene predicted gene, 26995
Tssr48405 5 117949568 to 117949592 24 + TSS region transcription start site region 48405
Cpgi16420 5 117976302 to 117978203 1901 CpG island CpG island 16420
Gm25343 5 117976454 to 117976560 106 - snRNA gene predicted gene, 25343
Fbxo21 5 117976730 to 118010201 33471 + protein coding gene F-box protein 21
Tssr48406 5 117976737 to 117976748 11 + TSS region transcription start site region 48406
Tssr48407 5 117976761 to 117976803 42 + TSS region transcription start site region 48407
Tssr1613 5 117988330 to 117988332 2 + TSS region transcription start site region 1613
D5Abb2e 5 118008129 to 118008281 152 DNA segment DNA segment, Chr 5, Abbott 2 expressed
Tssr48408 5 118010158 to 118010166 8 + TSS region transcription start site region 48408
Cpgi16421 5 118026114 to 118026484 370 CpG island CpG island 16421
Gm42545 5 118026449 to 118027370 921 - unclassified gene predicted gene 42545
Cpgi16422 5 118026929 to 118029322 2393 CpG island CpG island 16422
Tesc 5 118027748 to 118061878 34130 + protein coding gene tescalcin
Tssr48409 5 118027793 to 118027800 7 + TSS region transcription start site region 48409
Tssr48410 5 118027819 to 118027836 17 + TSS region transcription start site region 48410
Tssr48411 5 118027840 to 118027849 9 + TSS region transcription start site region 48411
Tssr48412 5 118027855 to 118027860 5 + TSS region transcription start site region 48412
Tssr48413 5 118036008 to 118036036 28 + TSS region transcription start site region 48413
Tssr48414 5 118037974 to 118037988 14 + TSS region transcription start site region 48414
Tssr48415 5 118038020 to 118038028 8 + TSS region transcription start site region 48415
Cpgi16423 5 118061234 to 118061632 398 CpG island CpG island 16423
Tssr52890 5 118064026 to 118064030 4 - TSS region transcription start site region 52890
Fbxw8 5 118064981 to 118155458 90477 - protein coding gene F-box and WD-40 domain protein 8
Gm9754 5 118065360 to 118069710 4350 + antisense lncRNA gene predicted gene 9754
Tssr52891 5 118067847 to 118067856 9 - TSS region transcription start site region 52891
Gm30466 5 118071174 to 118074364 3190 + lncRNA gene predicted gene, 30466
Gm26411 5 118148788 to 118148894 106 - snRNA gene predicted gene, 26411
Cpgi16424 5 118154907 to 118155611 704 CpG island CpG island 16424
Tssr48416 5 118154944 to 118154955 11 + TSS region transcription start site region 48416
Tssr52892 5 118155379 to 118155469 90 - TSS region transcription start site region 52892
Gm30522 5 118161138 to 118165023 3885 + lncRNA gene predicted gene, 30522
Cpgi16425 5 118169159 to 118170448 1289 CpG island CpG island 16425
Tssr52893 5 118169585 to 118169589 4 - TSS region transcription start site region 52893
Tssr48417 5 118169712 to 118169743 31 + TSS region transcription start site region 48417
Hrk 5 118169764 to 118189478 19714 + protein coding gene harakiri, BCL2 interacting protein (contains only BH3 domain)
Cpgi16426 5 118171263 to 118172536 1273 CpG island CpG island 16426
Rnft2 5 118190734 to 118245111 54377 - protein coding gene ring finger protein, transmembrane 2
Criq2 5 118194514 to 118194514 0 QTL Citrobacter rodentium infection QTL 2
Gm24050 5 118211053 to 118211342 289 - unclassified non-coding RNA gene predicted gene, 24050
Cpgi16427 5 118214410 to 118214845 435 CpG island CpG island 16427
Tssr52894 5 118232435 to 118232465 30 - TSS region transcription start site region 52894
Cpgi16428 5 118244633 to 118245632 999 CpG island CpG island 16428
Tssr52895 5 118244983 to 118245048 65 - TSS region transcription start site region 52895
Tssr48418 5 118245226 to 118245289 63 + TSS region transcription start site region 48418
2410131K14Rik 5 118245227 to 118263114 17887 + protein coding gene RIKEN cDNA 2410131K14 gene
Tssr48419 5 118245301 to 118245358 57 + TSS region transcription start site region 48419
Tssr48420 5 118245383 to 118245443 60 + TSS region transcription start site region 48420
Gm25076 5 118266449 to 118266580 131 + snoRNA gene predicted gene, 25076