Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:117409903-117909919

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16415 5 117413413 to 117414459 1046 CpG island CpG island 16415
Tssr48389 5 117413766 to 117413785 19 + TSS region transcription start site region 48389
Tssr48390 5 117413810 to 117413822 12 + TSS region transcription start site region 48390
Tssr48391 5 117413977 to 117414011 34 + TSS region transcription start site region 48391
Ksr2 5 117414000 to 117775003 361003 + protein coding gene kinase suppressor of ras 2
Tssr1612 5 117414425 to 117414504 79 + TSS region transcription start site region 1612
Tssr48392 5 117414807 to 117414823 16 + TSS region transcription start site region 48392
Tssr48393 5 117417688 to 117417709 21 + TSS region transcription start site region 48393
Gm42013 5 117482507 to 117486260 3753 - lncRNA gene predicted gene, 42013
Tssr52887 5 117484304 to 117484328 24 - TSS region transcription start site region 52887
Cpgi16416 5 117493365 to 117493822 457 CpG island CpG island 16416
Cpgi16417 5 117497057 to 117497428 371 CpG island CpG island 16417
Tssr48394 5 117509800 to 117509807 7 + TSS region transcription start site region 48394
Tssr48395 5 117509942 to 117509954 12 + TSS region transcription start site region 48395
Tssr48396 5 117510243 to 117510250 7 + TSS region transcription start site region 48396
Gm42550 5 117520699 to 117521658 959 + unclassified gene predicted gene 42550
Tammq2 5 117527900 to 117527900 0 QTL tibialis anterior muscle mass QTL 2
Smmq1 5 117527900 to 117527900 0 QTL soleus muscle mass QTL 1
Cpgi16418 5 117555197 to 117555462 265 CpG island CpG island 16418
Tssr48397 5 117659903 to 117659919 16 + TSS region transcription start site region 48397
Tssr48398 5 117769612 to 117769614 2 + TSS region transcription start site region 48398
Tssr48399 5 117781017 to 117781075 58 + TSS region transcription start site region 48399
Nos1 5 117781032 to 117958840 177808 + protein coding gene nitric oxide synthase 1, neuronal
Cpgi16419 5 117841754 to 117842962 1208 CpG island CpG island 16419
Tssr48400 5 117841839 to 117841857 18 + TSS region transcription start site region 48400
Tssr48401 5 117841884 to 117841925 41 + TSS region transcription start site region 48401
Tssr48402 5 117841930 to 117841939 9 + TSS region transcription start site region 48402
Tssr48403 5 117842113 to 117842167 54 + TSS region transcription start site region 48403
Gm30360 5 117857197 to 117879326 22129 - lncRNA gene predicted gene, 30360
Gm37028 5 117872813 to 117872919 106 + unclassified gene predicted gene, 37028
D5Mit188 5 117879630 to 117879777 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 188
Tssr52888 5 117900383 to 117900385 2 - TSS region transcription start site region 52888
Tssr52889 5 117909518 to 117909523 5 - TSS region transcription start site region 52889