Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:117239000-117950003

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Taok3 5 117120112 to 117275101 154989 + protein coding gene TAO kinase 3
Tssr48366 5 117240449 to 117240464 15 + TSS region transcription start site region 48366
Tssr48367 5 117240473 to 117240492 19 + TSS region transcription start site region 48367
Tssr48368 5 117240495 to 117240500 5 + TSS region transcription start site region 48368
Cpgi16407 5 117240785 to 117241327 542 CpG island CpG island 16407
Tssr48369 5 117240873 to 117240891 18 + TSS region transcription start site region 48369
Tssr48370 5 117240901 to 117240923 22 + TSS region transcription start site region 48370
Cpgi16408 5 117250875 to 117251056 181 CpG island CpG island 16408
Tssr48371 5 117252538 to 117252551 13 + TSS region transcription start site region 48371
Tssr48372 5 117256805 to 117256809 4 + TSS region transcription start site region 48372
Tssr48373 5 117273780 to 117273808 28 + TSS region transcription start site region 48373
Tssr48374 5 117274651 to 117274657 6 + TSS region transcription start site region 48374
Pebp1 5 117282651 to 117287564 4913 - protein coding gene phosphatidylethanolamine binding protein 1
Cpgi16409 5 117286875 to 117287874 999 CpG island CpG island 16409
Tssr52881 5 117287589 to 117287623 34 - TSS region transcription start site region 52881
Tssr48375 5 117292789 to 117292796 7 + TSS region transcription start site region 48375
Gm3786 5 117294029 to 117294406 377 - pseudogene predicted gene 3786
Gm42546 5 117299889 to 117302480 2591 + unclassified gene predicted gene 42546
Tssr52882 5 117305523 to 117305539 16 - TSS region transcription start site region 52882
BC051077 5 117312518 to 117315645 3127 - lincRNA gene cDNA sequence BC051077
Gm10399 5 117318497 to 117319244 747 - antisense lncRNA gene predicted gene 10399
Tssr48376 5 117318738 to 117318759 21 + TSS region transcription start site region 48376
Cpgi16410 5 117318754 to 117320029 1275 CpG island CpG island 16410
Tssr48377 5 117319062 to 117319109 47 + TSS region transcription start site region 48377
Vsig10 5 117319083 to 117355005 35922 + protein coding gene V-set and immunoglobulin domain containing 10
Tssr48378 5 117319258 to 117319284 26 + TSS region transcription start site region 48378
Tssr48379 5 117319292 to 117319326 34 + TSS region transcription start site region 48379
Tssr48380 5 117319341 to 117319352 11 + TSS region transcription start site region 48380
Cpgi16411 5 117334801 to 117335178 377 CpG island CpG island 16411
Gm15727 5 117348907 to 117349343 436 - pseudogene predicted gene 15727
Cpgi16412 5 117349072 to 117349449 377 CpG island CpG island 16412
Gm42012 5 117355490 to 117357156 1666 - lncRNA gene predicted gene, 42012
Tssr48381 5 117356630 to 117356641 11 + TSS region transcription start site region 48381
Cpgi16413 5 117356702 to 117358126 1424 CpG island CpG island 16413
Tssr48382 5 117356843 to 117356876 33 + TSS region transcription start site region 48382
Tssr48383 5 117357210 to 117357223 13 + TSS region transcription start site region 48383
Tssr48384 5 117357274 to 117357355 81 + TSS region transcription start site region 48384
Wsb2 5 117357305 to 117378589 21284 + protein coding gene WD repeat and SOCS box-containing 2
Tssr48385 5 117363498 to 117363512 14 + TSS region transcription start site region 48385
Tssr48386 5 117363513 to 117363552 39 + TSS region transcription start site region 48386
Rfc5 5 117379145 to 117389023 9878 - protein coding gene replication factor C (activator 1) 5
Cpgi16414 5 117388512 to 117389378 866 CpG island CpG island 16414
Tssr52883 5 117388973 to 117389027 54 - TSS region transcription start site region 52883
Gm15728 5 117388979 to 117391459 2480 + lincRNA gene predicted gene 15728
Tssr52884 5 117389029 to 117389051 22 - TSS region transcription start site region 52884
Tssr48387 5 117389115 to 117389181 66 + TSS region transcription start site region 48387
Tssr48388 5 117397511 to 117397529 18 + TSS region transcription start site region 48388
Tssr52885 5 117399384 to 117399392 8 - TSS region transcription start site region 52885
Tssr52886 5 117402971 to 117402981 10 - TSS region transcription start site region 52886
Cpgi16415 5 117413413 to 117414459 1046 CpG island CpG island 16415
Tssr48389 5 117413766 to 117413785 19 + TSS region transcription start site region 48389
Tssr48390 5 117413810 to 117413822 12 + TSS region transcription start site region 48390
Tssr48391 5 117413977 to 117414011 34 + TSS region transcription start site region 48391
Ksr2 5 117414000 to 117775003 361003 + protein coding gene kinase suppressor of ras 2
Tssr1612 5 117414425 to 117414504 79 + TSS region transcription start site region 1612
Tssr48392 5 117414807 to 117414823 16 + TSS region transcription start site region 48392
Tssr48393 5 117417688 to 117417709 21 + TSS region transcription start site region 48393
Gm42013 5 117482507 to 117486260 3753 - lncRNA gene predicted gene, 42013
Tssr52887 5 117484304 to 117484328 24 - TSS region transcription start site region 52887
Cpgi16416 5 117493365 to 117493822 457 CpG island CpG island 16416
Cpgi16417 5 117497057 to 117497428 371 CpG island CpG island 16417
Tssr48394 5 117509800 to 117509807 7 + TSS region transcription start site region 48394
Tssr48395 5 117509942 to 117509954 12 + TSS region transcription start site region 48395
Tssr48396 5 117510243 to 117510250 7 + TSS region transcription start site region 48396
Gm42550 5 117520699 to 117521658 959 + unclassified gene predicted gene 42550
Tammq2 5 117527900 to 117527900 0 QTL tibialis anterior muscle mass QTL 2
Smmq1 5 117527900 to 117527900 0 QTL soleus muscle mass QTL 1
Cpgi16418 5 117555197 to 117555462 265 CpG island CpG island 16418
Tssr48397 5 117659903 to 117659919 16 + TSS region transcription start site region 48397
Tssr48398 5 117769612 to 117769614 2 + TSS region transcription start site region 48398
Tssr48399 5 117781017 to 117781075 58 + TSS region transcription start site region 48399
Nos1 5 117781032 to 117958840 177808 + protein coding gene nitric oxide synthase 1, neuronal
Cpgi16419 5 117841754 to 117842962 1208 CpG island CpG island 16419
Tssr48400 5 117841839 to 117841857 18 + TSS region transcription start site region 48400
Tssr48401 5 117841884 to 117841925 41 + TSS region transcription start site region 48401
Tssr48402 5 117841930 to 117841939 9 + TSS region transcription start site region 48402
Tssr48403 5 117842113 to 117842167 54 + TSS region transcription start site region 48403
Gm30360 5 117857197 to 117879326 22129 - lncRNA gene predicted gene, 30360
Gm37028 5 117872813 to 117872919 106 + unclassified gene predicted gene, 37028
D5Mit188 5 117879630 to 117879777 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 188
Tssr52888 5 117900383 to 117900385 2 - TSS region transcription start site region 52888
Tssr52889 5 117909518 to 117909523 5 - TSS region transcription start site region 52889
Tssr48404 5 117910023 to 117910029 6 + TSS region transcription start site region 48404
D5Mit210a 5 117910948 to 117911226 278 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 210a
D5Mit210b 5 117911019 to 117911226 207 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 210b
D5Mit319 5 117932225 to 117932347 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 319
Gm26995 5 117938208 to 117939673 1465 - antisense lncRNA gene predicted gene, 26995
Tssr48405 5 117949568 to 117949592 24 + TSS region transcription start site region 48405