Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:116784002-118397996

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mrdq2 5 110105240 to 117955608 7850368 QTL modifier of retinal degeneration QTL 2
Gm43122 5 116642736 to 116830554 187818 - lincRNA gene predicted gene 43122
Tssr48347 5 116802691 to 116802699 8 + TSS region transcription start site region 48347
Gm29843 5 116802696 to 116804286 1590 + lncRNA gene predicted gene, 29843
Tssr48348 5 116802718 to 116802723 5 + TSS region transcription start site region 48348
Tssr48349 5 116802761 to 116802772 11 + TSS region transcription start site region 48349
Gm29926 5 116811231 to 116813828 2597 + lincRNA gene predicted gene, 29926
4930569F06Rik 5 116821454 to 116821886 432 + unclassified non-coding RNA gene RIKEN cDNA 4930569F06 gene
Gm42010 5 116880298 to 116884637 4339 + lncRNA gene predicted gene, 42010
Gm29972 5 116918766 to 116935265 16499 - lncRNA gene predicted gene, 29972
Cpgi16402 5 116956816 to 116957098 282 CpG island CpG island 16402
Gm30028 5 116998130 to 117018073 19943 - lncRNA gene predicted gene, 30028
Tssr52873 5 117004702 to 117004713 11 - TSS region transcription start site region 52873
Tssr52874 5 117004718 to 117004723 5 - TSS region transcription start site region 52874
Tssr52875 5 117004726 to 117004738 12 - TSS region transcription start site region 52875
Gm7478 5 117058812 to 117059392 580 + pseudogene predicted gene 7478
Gm42011 5 117075954 to 117087519 11565 + lncRNA gene predicted gene, 42011
Suds3 5 117091678 to 117115993 24315 - protein coding gene suppressor of defective silencing 3 homolog (S. cerevisiae)
Cpgi16403 5 117103668 to 117103841 173 CpG island CpG island 16403
Cpgi16404 5 117115124 to 117116432 1308 CpG island CpG island 16404
9530046B11Rik 5 117115218 to 117118723 3505 + antisense lncRNA gene RIKEN cDNA 9530046B11 gene
Tssr52876 5 117115882 to 117115906 24 - TSS region transcription start site region 52876
Tssr52877 5 117115909 to 117115958 49 - TSS region transcription start site region 52877
Tssr52878 5 117115972 to 117116010 38 - TSS region transcription start site region 52878
Tssr52879 5 117116085 to 117116097 12 - TSS region transcription start site region 52879
Cpgi16405 5 117119723 to 117121065 1342 CpG island CpG island 16405
Tssr52880 5 117119876 to 117119897 21 - TSS region transcription start site region 52880
Taok3 5 117120112 to 117275101 154989 + protein coding gene TAO kinase 3
Tssr48350 5 117120120 to 117120180 60 + TSS region transcription start site region 48350
Tssr48351 5 117120185 to 117120196 11 + TSS region transcription start site region 48351
Tssr48352 5 117126262 to 117126324 62 + TSS region transcription start site region 48352
Gm43637 5 117130323 to 117133248 2925 + unclassified gene predicted gene 43637
Tssr48353 5 117133567 to 117133649 82 + TSS region transcription start site region 48353
Cpgi16406 5 117133574 to 117133751 177 CpG island CpG island 16406
Tssr48354 5 117133652 to 117133663 11 + TSS region transcription start site region 48354
Tssr48355 5 117141883 to 117141896 13 + TSS region transcription start site region 48355
Tssr48356 5 117141988 to 117142002 14 + TSS region transcription start site region 48356
Tssr48357 5 117142117 to 117142128 11 + TSS region transcription start site region 48357
Tssr48358 5 117142159 to 117142175 16 + TSS region transcription start site region 48358
Tssr48359 5 117142186 to 117142206 20 + TSS region transcription start site region 48359
Tssr48360 5 117146750 to 117146760 10 + TSS region transcription start site region 48360
Tssr48361 5 117155272 to 117155310 38 + TSS region transcription start site region 48361
Tssr48362 5 117160462 to 117160467 5 + TSS region transcription start site region 48362
Tssr48363 5 117161993 to 117162019 26 + TSS region transcription start site region 48363
n-R5s174 5 117196555 to 117196675 120 + rRNA gene nuclear encoded rRNA 5S 174
Tssr48364 5 117209994 to 117210021 27 + TSS region transcription start site region 48364
Tssr48365 5 117210094 to 117210124 30 + TSS region transcription start site region 48365
Tssr48366 5 117240449 to 117240464 15 + TSS region transcription start site region 48366
Tssr48367 5 117240473 to 117240492 19 + TSS region transcription start site region 48367
Tssr48368 5 117240495 to 117240500 5 + TSS region transcription start site region 48368
Cpgi16407 5 117240785 to 117241327 542 CpG island CpG island 16407
Tssr48369 5 117240873 to 117240891 18 + TSS region transcription start site region 48369
Tssr48370 5 117240901 to 117240923 22 + TSS region transcription start site region 48370
Cpgi16408 5 117250875 to 117251056 181 CpG island CpG island 16408
Tssr48371 5 117252538 to 117252551 13 + TSS region transcription start site region 48371
Tssr48372 5 117256805 to 117256809 4 + TSS region transcription start site region 48372
Tssr48373 5 117273780 to 117273808 28 + TSS region transcription start site region 48373
Tssr48374 5 117274651 to 117274657 6 + TSS region transcription start site region 48374
Pebp1 5 117282651 to 117287564 4913 - protein coding gene phosphatidylethanolamine binding protein 1
Cpgi16409 5 117286875 to 117287874 999 CpG island CpG island 16409
Tssr52881 5 117287589 to 117287623 34 - TSS region transcription start site region 52881
Tssr48375 5 117292789 to 117292796 7 + TSS region transcription start site region 48375
Gm3786 5 117294029 to 117294406 377 - pseudogene predicted gene 3786
Gm42546 5 117299889 to 117302480 2591 + unclassified gene predicted gene 42546
Tssr52882 5 117305523 to 117305539 16 - TSS region transcription start site region 52882
BC051077 5 117312518 to 117315645 3127 - lincRNA gene cDNA sequence BC051077
Gm10399 5 117318497 to 117319244 747 - antisense lncRNA gene predicted gene 10399
Tssr48376 5 117318738 to 117318759 21 + TSS region transcription start site region 48376
Cpgi16410 5 117318754 to 117320029 1275 CpG island CpG island 16410
Tssr48377 5 117319062 to 117319109 47 + TSS region transcription start site region 48377
Vsig10 5 117319083 to 117355005 35922 + protein coding gene V-set and immunoglobulin domain containing 10
Tssr48378 5 117319258 to 117319284 26 + TSS region transcription start site region 48378
Tssr48379 5 117319292 to 117319326 34 + TSS region transcription start site region 48379
Tssr48380 5 117319341 to 117319352 11 + TSS region transcription start site region 48380
Cpgi16411 5 117334801 to 117335178 377 CpG island CpG island 16411
Gm15727 5 117348907 to 117349343 436 - pseudogene predicted gene 15727
Cpgi16412 5 117349072 to 117349449 377 CpG island CpG island 16412
Gm42012 5 117355490 to 117357156 1666 - lncRNA gene predicted gene, 42012
Tssr48381 5 117356630 to 117356641 11 + TSS region transcription start site region 48381
Cpgi16413 5 117356702 to 117358126 1424 CpG island CpG island 16413
Tssr48382 5 117356843 to 117356876 33 + TSS region transcription start site region 48382
Tssr48383 5 117357210 to 117357223 13 + TSS region transcription start site region 48383
Tssr48384 5 117357274 to 117357355 81 + TSS region transcription start site region 48384
Wsb2 5 117357305 to 117378589 21284 + protein coding gene WD repeat and SOCS box-containing 2
Tssr48385 5 117363498 to 117363512 14 + TSS region transcription start site region 48385
Tssr48386 5 117363513 to 117363552 39 + TSS region transcription start site region 48386
Rfc5 5 117379145 to 117389023 9878 - protein coding gene replication factor C (activator 1) 5
Cpgi16414 5 117388512 to 117389378 866 CpG island CpG island 16414
Tssr52883 5 117388973 to 117389027 54 - TSS region transcription start site region 52883
Gm15728 5 117388979 to 117391459 2480 + lincRNA gene predicted gene 15728
Tssr52884 5 117389029 to 117389051 22 - TSS region transcription start site region 52884
Tssr48387 5 117389115 to 117389181 66 + TSS region transcription start site region 48387
Tssr48388 5 117397511 to 117397529 18 + TSS region transcription start site region 48388
Tssr52885 5 117399384 to 117399392 8 - TSS region transcription start site region 52885
Tssr52886 5 117402971 to 117402981 10 - TSS region transcription start site region 52886
Cpgi16415 5 117413413 to 117414459 1046 CpG island CpG island 16415
Tssr48389 5 117413766 to 117413785 19 + TSS region transcription start site region 48389
Tssr48390 5 117413810 to 117413822 12 + TSS region transcription start site region 48390
Tssr48391 5 117413977 to 117414011 34 + TSS region transcription start site region 48391
Ksr2 5 117414000 to 117775003 361003 + protein coding gene kinase suppressor of ras 2
Tssr1612 5 117414425 to 117414504 79 + TSS region transcription start site region 1612
Tssr48392 5 117414807 to 117414823 16 + TSS region transcription start site region 48392
Tssr48393 5 117417688 to 117417709 21 + TSS region transcription start site region 48393
Gm42013 5 117482507 to 117486260 3753 - lncRNA gene predicted gene, 42013
Tssr52887 5 117484304 to 117484328 24 - TSS region transcription start site region 52887
Cpgi16416 5 117493365 to 117493822 457 CpG island CpG island 16416
Cpgi16417 5 117497057 to 117497428 371 CpG island CpG island 16417
Tssr48394 5 117509800 to 117509807 7 + TSS region transcription start site region 48394
Tssr48395 5 117509942 to 117509954 12 + TSS region transcription start site region 48395
Tssr48396 5 117510243 to 117510250 7 + TSS region transcription start site region 48396
Gm42550 5 117520699 to 117521658 959 + unclassified gene predicted gene 42550
Smmq1 5 117527900 to 117527900 0 QTL soleus muscle mass QTL 1
Tammq2 5 117527900 to 117527900 0 QTL tibialis anterior muscle mass QTL 2
Cpgi16418 5 117555197 to 117555462 265 CpG island CpG island 16418
Tssr48397 5 117659903 to 117659919 16 + TSS region transcription start site region 48397
Tssr48398 5 117769612 to 117769614 2 + TSS region transcription start site region 48398
Tssr48399 5 117781017 to 117781075 58 + TSS region transcription start site region 48399
Nos1 5 117781032 to 117958840 177808 + protein coding gene nitric oxide synthase 1, neuronal
Cpgi16419 5 117841754 to 117842962 1208 CpG island CpG island 16419
Tssr48400 5 117841839 to 117841857 18 + TSS region transcription start site region 48400
Tssr48401 5 117841884 to 117841925 41 + TSS region transcription start site region 48401
Tssr48402 5 117841930 to 117841939 9 + TSS region transcription start site region 48402
Tssr48403 5 117842113 to 117842167 54 + TSS region transcription start site region 48403
Gm30360 5 117857197 to 117879326 22129 - lncRNA gene predicted gene, 30360
Gm37028 5 117872813 to 117872919 106 + unclassified gene predicted gene, 37028
D5Mit188 5 117879630 to 117879777 147 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 188
Tssr52888 5 117900383 to 117900385 2 - TSS region transcription start site region 52888
Tssr52889 5 117909518 to 117909523 5 - TSS region transcription start site region 52889
Tssr48404 5 117910023 to 117910029 6 + TSS region transcription start site region 48404
D5Mit210a 5 117910948 to 117911226 278 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 210a
D5Mit210b 5 117911019 to 117911226 207 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 210b
D5Mit319 5 117932225 to 117932347 122 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 319
Gm26995 5 117938208 to 117939673 1465 - antisense lncRNA gene predicted gene, 26995
Tssr48405 5 117949568 to 117949592 24 + TSS region transcription start site region 48405
Cpgi16420 5 117976302 to 117978203 1901 CpG island CpG island 16420
Gm25343 5 117976454 to 117976560 106 - snRNA gene predicted gene, 25343
Fbxo21 5 117976730 to 118010201 33471 + protein coding gene F-box protein 21
Tssr48406 5 117976737 to 117976748 11 + TSS region transcription start site region 48406
Tssr48407 5 117976761 to 117976803 42 + TSS region transcription start site region 48407
Tssr1613 5 117988330 to 117988332 2 + TSS region transcription start site region 1613
D5Abb2e 5 118008129 to 118008281 152 DNA segment DNA segment, Chr 5, Abbott 2 expressed
Tssr48408 5 118010158 to 118010166 8 + TSS region transcription start site region 48408
Cpgi16421 5 118026114 to 118026484 370 CpG island CpG island 16421
Gm42545 5 118026449 to 118027370 921 - unclassified gene predicted gene 42545
Cpgi16422 5 118026929 to 118029322 2393 CpG island CpG island 16422
Tesc 5 118027748 to 118061878 34130 + protein coding gene tescalcin
Tssr48409 5 118027793 to 118027800 7 + TSS region transcription start site region 48409
Tssr48410 5 118027819 to 118027836 17 + TSS region transcription start site region 48410
Tssr48411 5 118027840 to 118027849 9 + TSS region transcription start site region 48411
Tssr48412 5 118027855 to 118027860 5 + TSS region transcription start site region 48412
Tssr48413 5 118036008 to 118036036 28 + TSS region transcription start site region 48413
Tssr48414 5 118037974 to 118037988 14 + TSS region transcription start site region 48414
Tssr48415 5 118038020 to 118038028 8 + TSS region transcription start site region 48415
Cpgi16423 5 118061234 to 118061632 398 CpG island CpG island 16423
Tssr52890 5 118064026 to 118064030 4 - TSS region transcription start site region 52890
Fbxw8 5 118064981 to 118155458 90477 - protein coding gene F-box and WD-40 domain protein 8
Gm9754 5 118065360 to 118069710 4350 + antisense lncRNA gene predicted gene 9754
Tssr52891 5 118067847 to 118067856 9 - TSS region transcription start site region 52891
Gm30466 5 118071174 to 118074364 3190 + lncRNA gene predicted gene, 30466
Gm26411 5 118148788 to 118148894 106 - snRNA gene predicted gene, 26411
Cpgi16424 5 118154907 to 118155611 704 CpG island CpG island 16424
Tssr48416 5 118154944 to 118154955 11 + TSS region transcription start site region 48416
Tssr52892 5 118155379 to 118155469 90 - TSS region transcription start site region 52892
Gm30522 5 118161138 to 118165023 3885 + lncRNA gene predicted gene, 30522
Cpgi16425 5 118169159 to 118170448 1289 CpG island CpG island 16425
Tssr52893 5 118169585 to 118169589 4 - TSS region transcription start site region 52893
Tssr48417 5 118169712 to 118169743 31 + TSS region transcription start site region 48417
Hrk 5 118169764 to 118189478 19714 + protein coding gene harakiri, BCL2 interacting protein (contains only BH3 domain)
Cpgi16426 5 118171263 to 118172536 1273 CpG island CpG island 16426
Rnft2 5 118190734 to 118245111 54377 - protein coding gene ring finger protein, transmembrane 2
Criq2 5 118194514 to 118194514 0 QTL Citrobacter rodentium infection QTL 2
Gm24050 5 118211053 to 118211342 289 - unclassified non-coding RNA gene predicted gene, 24050
Cpgi16427 5 118214410 to 118214845 435 CpG island CpG island 16427
Tssr52894 5 118232435 to 118232465 30 - TSS region transcription start site region 52894
Cpgi16428 5 118244633 to 118245632 999 CpG island CpG island 16428
Tssr52895 5 118244983 to 118245048 65 - TSS region transcription start site region 52895
Tssr48418 5 118245226 to 118245289 63 + TSS region transcription start site region 48418
2410131K14Rik 5 118245227 to 118263114 17887 + protein coding gene RIKEN cDNA 2410131K14 gene
Tssr48419 5 118245301 to 118245358 57 + TSS region transcription start site region 48419
Tssr48420 5 118245383 to 118245443 60 + TSS region transcription start site region 48420
Gm25076 5 118266449 to 118266580 131 + snoRNA gene predicted gene, 25076
Tssr48421 5 118318967 to 118318972 5 + TSS region transcription start site region 48421
Cpgi16429 5 118326996 to 118327225 229 CpG island CpG island 16429
Cpgi16430 5 118331208 to 118331448 240 CpG island CpG island 16430
Cpgi16431 5 118331914 to 118332269 355 CpG island CpG island 16431
Gm46942 5 118359909 to 118360405 496 + lncRNA gene predicted gene, 46942
Gm30604 5 118373154 to 118380918 7764 - lncRNA gene predicted gene, 30604
Tssr52896 5 118380484 to 118380502 18 - TSS region transcription start site region 52896
Cpgi16432 5 118380624 to 118381021 397 CpG island CpG island 16432
Cpgi16433 5 118381344 to 118381586 242 CpG island CpG island 16433
Tssr48422 5 118381646 to 118381658 12 + TSS region transcription start site region 48422
Cpgi16434 5 118396257 to 118396496 239 CpG island CpG island 16434
Gm28563 5 118396806 to 118397330 524 - lincRNA gene predicted gene 28563