MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:116421285-116461296

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Hspb8	5	116408491 to 116422864	14373	-	protein coding gene	heat shock protein 8
Cpgi16395	5	116422231 to 116422559	328		CpG island	CpG island 16395
Tssr52857	5	116422644 to 116422686	42	-	TSS region	transcription start site region 52857
Tssr52858	5	116422739 to 116422780	41	-	TSS region	transcription start site region 52858
Tssr52859	5	116422792 to 116422807	15	-	TSS region	transcription start site region 52859
Tssr52860	5	116422824 to 116422836	12	-	TSS region	transcription start site region 52860
Tssr52861	5	116422858 to 116422873	15	-	TSS region	transcription start site region 52861
Tssr52862	5	116422951 to 116423025	74	-	TSS region	transcription start site region 52862
Gm42009	5	116423057 to 116426000	2943	+	lncRNA gene	predicted gene, 42009
Tssr48345	5	116438712 to 116438723	11	+	TSS region	transcription start site region 48345
Srrm4os	5	116438722 to 116465487	26765	+	antisense lncRNA gene	serine/arginine repetitive matrix 4, opposite strand
Srrm4	5	116439275 to 116591817	152542	-	protein coding gene	serine/arginine repetitive matrix 4
Tssr52863	5	116441285 to 116441296	11	-	TSS region	transcription start site region 52863
Cpgi16396	5	116444439 to 116444859	420		CpG island	CpG island 16396
Cpgi16397	5	116446531 to 116446891	360		CpG island	CpG island 16397
Tssr52864	5	116446707 to 116446740	33	-	TSS region	transcription start site region 52864
Cpgi16398	5	116453475 to 116453770	295		CpG island	CpG island 16398
Gm42853	5	116456098 to 116457484	1386	-	unclassified gene	predicted gene 42853