Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:116308491-116522864

36 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm13838	5	116305682 to 116309360	3678	-	lincRNA gene	predicted gene 13838
B230112J18Rik	5	116312360 to 116318275	5915	+	lincRNA gene	RIKEN cDNA B230112J18 gene
Cpgi16393	5	116350842 to 116351020	178		CpG island	CpG island 16393
4933424N20Rik	5	116380173 to 116381635	1462	-	unclassified gene	RIKEN cDNA 4933424N20 gene
Cpgi16394	5	116381279 to 116381438	159		CpG island	CpG island 16394
Tssr52849	5	116381599 to 116381604	5	-	TSS region	transcription start site region 52849
Tssr52850	5	116381620 to 116381638	18	-	TSS region	transcription start site region 52850
Tssr52851	5	116381641 to 116381644	3	-	TSS region	transcription start site region 52851
Tssr52852	5	116381648 to 116381653	5	-	TSS region	transcription start site region 52852
Tssr52853	5	116382703 to 116382707	4	-	TSS region	transcription start site region 52853
4930562A09Rik	5	116390678 to 116392800	2122	-	lincRNA gene	RIKEN cDNA 4930562A09 gene
Tssr52854	5	116392743 to 116392750	7	-	TSS region	transcription start site region 52854
Tssr52855	5	116392766 to 116392773	7	-	TSS region	transcription start site region 52855
Tssr48344	5	116406790 to 116406801	11	+	TSS region	transcription start site region 48344
Hspb8	5	116408491 to 116422864	14373	-	protein coding gene	heat shock protein 8
Tssr52856	5	116408840 to 116408865	25	-	TSS region	transcription start site region 52856
Gm36841	5	116412423 to 116418761	6338	+	lncRNA gene	predicted gene, 36841
Cpgi16395	5	116422231 to 116422559	328		CpG island	CpG island 16395
Tssr52857	5	116422644 to 116422686	42	-	TSS region	transcription start site region 52857
Tssr52858	5	116422739 to 116422780	41	-	TSS region	transcription start site region 52858
Tssr52859	5	116422792 to 116422807	15	-	TSS region	transcription start site region 52859
Tssr52860	5	116422824 to 116422836	12	-	TSS region	transcription start site region 52860
Tssr52861	5	116422858 to 116422873	15	-	TSS region	transcription start site region 52861
Tssr52862	5	116422951 to 116423025	74	-	TSS region	transcription start site region 52862
Gm42009	5	116423057 to 116426000	2943	+	lncRNA gene	predicted gene, 42009
Tssr48345	5	116438712 to 116438723	11	+	TSS region	transcription start site region 48345
Srrm4os	5	116438722 to 116465487	26765	+	antisense lncRNA gene	serine/arginine repetitive matrix 4, opposite strand
Srrm4	5	116439275 to 116591817	152542	-	protein coding gene	serine/arginine repetitive matrix 4
Tssr52863	5	116441285 to 116441296	11	-	TSS region	transcription start site region 52863
Cpgi16396	5	116444439 to 116444859	420		CpG island	CpG island 16396
Cpgi16397	5	116446531 to 116446891	360		CpG island	CpG island 16397
Tssr52864	5	116446707 to 116446740	33	-	TSS region	transcription start site region 52864
Cpgi16398	5	116453475 to 116453770	295		CpG island	CpG island 16398
Gm42853	5	116456098 to 116457484	1386	-	unclassified gene	predicted gene 42853
4933430H06Rik	5	116501374 to 116502716	1342	-	unclassified gene	RIKEN cDNA 4933430H06 gene
Cpgi16399	5	116510686 to 116511107	421		CpG island	CpG island 16399