Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:116166816-117747098

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc60 5 116125581 to 116289004 163423 - protein coding gene coiled-coil domain containing 60
Gm36552 5 116192711 to 116206698 13987 + lncRNA gene predicted gene, 36552
Tssr48343 5 116230448 to 116230449 1 + TSS region transcription start site region 48343
Gm36502 5 116232070 to 116238073 6003 + lncRNA gene predicted gene, 36502
Gm14507 5 116243706 to 116254953 11247 + antisense lncRNA gene predicted gene 14507
Gm13837 5 116257661 to 116258644 983 + antisense lncRNA gene predicted gene 13837
Tssr52846 5 116288944 to 116288977 33 - TSS region transcription start site region 52846
Tssr52847 5 116288978 to 116288999 21 - TSS region transcription start site region 52847
Tssr52848 5 116289000 to 116289009 9 - TSS region transcription start site region 52848
Gm13839 5 116301300 to 116303514 2214 + lincRNA gene predicted gene 13839
Gm13838 5 116305682 to 116309360 3678 - lincRNA gene predicted gene 13838
B230112J18Rik 5 116312360 to 116318275 5915 + lincRNA gene RIKEN cDNA B230112J18 gene
Cpgi16393 5 116350842 to 116351020 178 CpG island CpG island 16393
4933424N20Rik 5 116380173 to 116381635 1462 - unclassified gene RIKEN cDNA 4933424N20 gene
Cpgi16394 5 116381279 to 116381438 159 CpG island CpG island 16394
Tssr52849 5 116381599 to 116381604 5 - TSS region transcription start site region 52849
Tssr52850 5 116381620 to 116381638 18 - TSS region transcription start site region 52850
Tssr52851 5 116381641 to 116381644 3 - TSS region transcription start site region 52851
Tssr52852 5 116381648 to 116381653 5 - TSS region transcription start site region 52852
Tssr52853 5 116382703 to 116382707 4 - TSS region transcription start site region 52853
4930562A09Rik 5 116390678 to 116392800 2122 - lincRNA gene RIKEN cDNA 4930562A09 gene
Tssr52854 5 116392743 to 116392750 7 - TSS region transcription start site region 52854
Tssr52855 5 116392766 to 116392773 7 - TSS region transcription start site region 52855
Tssr48344 5 116406790 to 116406801 11 + TSS region transcription start site region 48344
Hspb8 5 116408491 to 116422864 14373 - protein coding gene heat shock protein 8
Tssr52856 5 116408840 to 116408865 25 - TSS region transcription start site region 52856
Gm36841 5 116412423 to 116418761 6338 + lncRNA gene predicted gene, 36841
Cpgi16395 5 116422231 to 116422559 328 CpG island CpG island 16395
Tssr52857 5 116422644 to 116422686 42 - TSS region transcription start site region 52857
Tssr52858 5 116422739 to 116422780 41 - TSS region transcription start site region 52858
Tssr52859 5 116422792 to 116422807 15 - TSS region transcription start site region 52859
Tssr52860 5 116422824 to 116422836 12 - TSS region transcription start site region 52860
Tssr52861 5 116422858 to 116422873 15 - TSS region transcription start site region 52861
Tssr52862 5 116422951 to 116423025 74 - TSS region transcription start site region 52862
Gm42009 5 116423057 to 116426000 2943 + lncRNA gene predicted gene, 42009
Tssr48345 5 116438712 to 116438723 11 + TSS region transcription start site region 48345
Srrm4os 5 116438722 to 116465487 26765 + antisense lncRNA gene serine/arginine repetitive matrix 4, opposite strand
Srrm4 5 116439275 to 116591817 152542 - protein coding gene serine/arginine repetitive matrix 4
Tssr52863 5 116441285 to 116441296 11 - TSS region transcription start site region 52863
Cpgi16396 5 116444439 to 116444859 420 CpG island CpG island 16396
Cpgi16397 5 116446531 to 116446891 360 CpG island CpG island 16397
Tssr52864 5 116446707 to 116446740 33 - TSS region transcription start site region 52864
Cpgi16398 5 116453475 to 116453770 295 CpG island CpG island 16398
Gm42853 5 116456098 to 116457484 1386 - unclassified gene predicted gene 42853
4933430H06Rik 5 116501374 to 116502716 1342 - unclassified gene RIKEN cDNA 4933430H06 gene
Cpgi16399 5 116510686 to 116511107 421 CpG island CpG island 16399
Tssr52865 5 116545045 to 116545055 10 - TSS region transcription start site region 52865
Tssr52866 5 116545850 to 116545880 30 - TSS region transcription start site region 52866
Cpgi16400 5 116571580 to 116571740 160 CpG island CpG island 16400
Gm42854 5 116572527 to 116573495 968 - sense intronic lncRNA gene predicted gene 42854
Cpgi16401 5 116591005 to 116592580 1575 CpG island CpG island 16401
Tssr52867 5 116591472 to 116591483 11 - TSS region transcription start site region 52867
Tssr52868 5 116591782 to 116591793 11 - TSS region transcription start site region 52868
Tssr52869 5 116591811 to 116591830 19 - TSS region transcription start site region 52869
Tssr52870 5 116591858 to 116591865 7 - TSS region transcription start site region 52870
D5Mit209 5 116622324 to 116622648 324 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 209
Gstm2-ps1 5 116632908 to 116633564 656 - pseudogene glutathione S-transferase mu 2 (muscle), pseudogene 1
Tssr52871 5 116633015 to 116633019 4 - TSS region transcription start site region 52871
Tssr52872 5 116633605 to 116633607 2 - TSS region transcription start site region 52872
Tssr48346 5 116635293 to 116635299 6 + TSS region transcription start site region 48346
Gm43122 5 116642736 to 116830554 187818 - lincRNA gene predicted gene 43122
D5Mit405 5 116738442 to 116738565 123 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 405
Elmaz1 5 116738565 to 97871790 -18866775 QTL elevated maze behavior 1
Tssr48347 5 116802691 to 116802699 8 + TSS region transcription start site region 48347
Gm29843 5 116802696 to 116804286 1590 + lncRNA gene predicted gene, 29843
Tssr48348 5 116802718 to 116802723 5 + TSS region transcription start site region 48348
Tssr48349 5 116802761 to 116802772 11 + TSS region transcription start site region 48349
Gm29926 5 116811231 to 116813828 2597 + lincRNA gene predicted gene, 29926
4930569F06Rik 5 116821454 to 116821886 432 + unclassified non-coding RNA gene RIKEN cDNA 4930569F06 gene
Gm42010 5 116880298 to 116884637 4339 + lncRNA gene predicted gene, 42010
Gm29972 5 116918766 to 116935265 16499 - lncRNA gene predicted gene, 29972
Cpgi16402 5 116956816 to 116957098 282 CpG island CpG island 16402
Gm30028 5 116998130 to 117018073 19943 - lncRNA gene predicted gene, 30028
Tssr52873 5 117004702 to 117004713 11 - TSS region transcription start site region 52873
Tssr52874 5 117004718 to 117004723 5 - TSS region transcription start site region 52874
Tssr52875 5 117004726 to 117004738 12 - TSS region transcription start site region 52875
Gm7478 5 117058812 to 117059392 580 + pseudogene predicted gene 7478
Gm42011 5 117075954 to 117087519 11565 + lncRNA gene predicted gene, 42011
Suds3 5 117091678 to 117115993 24315 - protein coding gene suppressor of defective silencing 3 homolog (S. cerevisiae)
Cpgi16403 5 117103668 to 117103841 173 CpG island CpG island 16403
Cpgi16404 5 117115124 to 117116432 1308 CpG island CpG island 16404
9530046B11Rik 5 117115218 to 117118723 3505 + antisense lncRNA gene RIKEN cDNA 9530046B11 gene
Tssr52876 5 117115882 to 117115906 24 - TSS region transcription start site region 52876
Tssr52877 5 117115909 to 117115958 49 - TSS region transcription start site region 52877
Tssr52878 5 117115972 to 117116010 38 - TSS region transcription start site region 52878
Tssr52879 5 117116085 to 117116097 12 - TSS region transcription start site region 52879
Cpgi16405 5 117119723 to 117121065 1342 CpG island CpG island 16405
Tssr52880 5 117119876 to 117119897 21 - TSS region transcription start site region 52880
Taok3 5 117120112 to 117275101 154989 + protein coding gene TAO kinase 3
Tssr48350 5 117120120 to 117120180 60 + TSS region transcription start site region 48350
Tssr48351 5 117120185 to 117120196 11 + TSS region transcription start site region 48351
Tssr48352 5 117126262 to 117126324 62 + TSS region transcription start site region 48352
Gm43637 5 117130323 to 117133248 2925 + unclassified gene predicted gene 43637
Tssr48353 5 117133567 to 117133649 82 + TSS region transcription start site region 48353
Cpgi16406 5 117133574 to 117133751 177 CpG island CpG island 16406
Tssr48354 5 117133652 to 117133663 11 + TSS region transcription start site region 48354
Tssr48355 5 117141883 to 117141896 13 + TSS region transcription start site region 48355
Tssr48356 5 117141988 to 117142002 14 + TSS region transcription start site region 48356
Tssr48357 5 117142117 to 117142128 11 + TSS region transcription start site region 48357
Tssr48358 5 117142159 to 117142175 16 + TSS region transcription start site region 48358
Tssr48359 5 117142186 to 117142206 20 + TSS region transcription start site region 48359
Tssr48360 5 117146750 to 117146760 10 + TSS region transcription start site region 48360
Tssr48361 5 117155272 to 117155310 38 + TSS region transcription start site region 48361
Tssr48362 5 117160462 to 117160467 5 + TSS region transcription start site region 48362
Tssr48363 5 117161993 to 117162019 26 + TSS region transcription start site region 48363
n-R5s174 5 117196555 to 117196675 120 + rRNA gene nuclear encoded rRNA 5S 174
Tssr48364 5 117209994 to 117210021 27 + TSS region transcription start site region 48364
Tssr48365 5 117210094 to 117210124 30 + TSS region transcription start site region 48365
Tssr48366 5 117240449 to 117240464 15 + TSS region transcription start site region 48366
Tssr48367 5 117240473 to 117240492 19 + TSS region transcription start site region 48367
Tssr48368 5 117240495 to 117240500 5 + TSS region transcription start site region 48368
Cpgi16407 5 117240785 to 117241327 542 CpG island CpG island 16407
Tssr48369 5 117240873 to 117240891 18 + TSS region transcription start site region 48369
Tssr48370 5 117240901 to 117240923 22 + TSS region transcription start site region 48370
Cpgi16408 5 117250875 to 117251056 181 CpG island CpG island 16408
Tssr48371 5 117252538 to 117252551 13 + TSS region transcription start site region 48371
Tssr48372 5 117256805 to 117256809 4 + TSS region transcription start site region 48372
Tssr48373 5 117273780 to 117273808 28 + TSS region transcription start site region 48373
Tssr48374 5 117274651 to 117274657 6 + TSS region transcription start site region 48374
Pebp1 5 117282651 to 117287564 4913 - protein coding gene phosphatidylethanolamine binding protein 1
Cpgi16409 5 117286875 to 117287874 999 CpG island CpG island 16409
Tssr52881 5 117287589 to 117287623 34 - TSS region transcription start site region 52881
Tssr48375 5 117292789 to 117292796 7 + TSS region transcription start site region 48375
Gm3786 5 117294029 to 117294406 377 - pseudogene predicted gene 3786
Gm42546 5 117299889 to 117302480 2591 + unclassified gene predicted gene 42546
Tssr52882 5 117305523 to 117305539 16 - TSS region transcription start site region 52882
BC051077 5 117312518 to 117315645 3127 - lincRNA gene cDNA sequence BC051077
Gm10399 5 117318497 to 117319244 747 - antisense lncRNA gene predicted gene 10399
Tssr48376 5 117318738 to 117318759 21 + TSS region transcription start site region 48376
Cpgi16410 5 117318754 to 117320029 1275 CpG island CpG island 16410
Tssr48377 5 117319062 to 117319109 47 + TSS region transcription start site region 48377
Vsig10 5 117319083 to 117355005 35922 + protein coding gene V-set and immunoglobulin domain containing 10
Tssr48378 5 117319258 to 117319284 26 + TSS region transcription start site region 48378
Tssr48379 5 117319292 to 117319326 34 + TSS region transcription start site region 48379
Tssr48380 5 117319341 to 117319352 11 + TSS region transcription start site region 48380
Cpgi16411 5 117334801 to 117335178 377 CpG island CpG island 16411
Gm15727 5 117348907 to 117349343 436 - pseudogene predicted gene 15727
Cpgi16412 5 117349072 to 117349449 377 CpG island CpG island 16412
Gm42012 5 117355490 to 117357156 1666 - lncRNA gene predicted gene, 42012
Tssr48381 5 117356630 to 117356641 11 + TSS region transcription start site region 48381
Cpgi16413 5 117356702 to 117358126 1424 CpG island CpG island 16413
Tssr48382 5 117356843 to 117356876 33 + TSS region transcription start site region 48382
Tssr48383 5 117357210 to 117357223 13 + TSS region transcription start site region 48383
Tssr48384 5 117357274 to 117357355 81 + TSS region transcription start site region 48384
Wsb2 5 117357305 to 117378589 21284 + protein coding gene WD repeat and SOCS box-containing 2
Tssr48385 5 117363498 to 117363512 14 + TSS region transcription start site region 48385
Tssr48386 5 117363513 to 117363552 39 + TSS region transcription start site region 48386
Rfc5 5 117379145 to 117389023 9878 - protein coding gene replication factor C (activator 1) 5
Cpgi16414 5 117388512 to 117389378 866 CpG island CpG island 16414
Tssr52883 5 117388973 to 117389027 54 - TSS region transcription start site region 52883
Gm15728 5 117388979 to 117391459 2480 + lincRNA gene predicted gene 15728
Tssr52884 5 117389029 to 117389051 22 - TSS region transcription start site region 52884
Tssr48387 5 117389115 to 117389181 66 + TSS region transcription start site region 48387
Tssr48388 5 117397511 to 117397529 18 + TSS region transcription start site region 48388
Tssr52885 5 117399384 to 117399392 8 - TSS region transcription start site region 52885
Tssr52886 5 117402971 to 117402981 10 - TSS region transcription start site region 52886
Cpgi16415 5 117413413 to 117414459 1046 CpG island CpG island 16415
Tssr48389 5 117413766 to 117413785 19 + TSS region transcription start site region 48389
Tssr48390 5 117413810 to 117413822 12 + TSS region transcription start site region 48390
Tssr48391 5 117413977 to 117414011 34 + TSS region transcription start site region 48391
Ksr2 5 117414000 to 117775003 361003 + protein coding gene kinase suppressor of ras 2
Tssr1612 5 117414425 to 117414504 79 + TSS region transcription start site region 1612
Tssr48392 5 117414807 to 117414823 16 + TSS region transcription start site region 48392
Tssr48393 5 117417688 to 117417709 21 + TSS region transcription start site region 48393
Gm42013 5 117482507 to 117486260 3753 - lncRNA gene predicted gene, 42013
Tssr52887 5 117484304 to 117484328 24 - TSS region transcription start site region 52887
Cpgi16416 5 117493365 to 117493822 457 CpG island CpG island 16416
Cpgi16417 5 117497057 to 117497428 371 CpG island CpG island 16417
Tssr48394 5 117509800 to 117509807 7 + TSS region transcription start site region 48394
Tssr48395 5 117509942 to 117509954 12 + TSS region transcription start site region 48395
Tssr48396 5 117510243 to 117510250 7 + TSS region transcription start site region 48396
Gm42550 5 117520699 to 117521658 959 + unclassified gene predicted gene 42550
Smmq1 5 117527900 to 117527900 0 QTL soleus muscle mass QTL 1
Tammq2 5 117527900 to 117527900 0 QTL tibialis anterior muscle mass QTL 2
Cpgi16418 5 117555197 to 117555462 265 CpG island CpG island 16418
Tssr48397 5 117659903 to 117659919 16 + TSS region transcription start site region 48397