Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115963491-116867864

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cit 5 115845224 to 116008586 163362 + protein coding gene citron
Tssr48336 5 115974854 to 115974856 2 + TSS region transcription start site region 48336
Tssr48337 5 115989815 to 115989820 5 + TSS region transcription start site region 48337
Cpgi16389 5 115994225 to 115994441 216 CpG island CpG island 16389
Tssr48338 5 116006777 to 116006781 4 + TSS region transcription start site region 48338
Tssr48339 5 116006831 to 116006835 4 + TSS region transcription start site region 48339
Gm14508 5 116009316 to 116016105 6789 + antisense lncRNA gene predicted gene 14508
Tssr48340 5 116009323 to 116009330 7 + TSS region transcription start site region 48340
Prkab1 5 116013586 to 116024503 10917 - protein coding gene protein kinase, AMP-activated, beta 1 non-catalytic subunit
Tssr52830 5 116021684 to 116021696 12 - TSS region transcription start site region 52830
Tssr52831 5 116021703 to 116021714 11 - TSS region transcription start site region 52831
Tssr52832 5 116021732 to 116021745 13 - TSS region transcription start site region 52832
Tssr52833 5 116021769 to 116021779 10 - TSS region transcription start site region 52833
Cpgi16390 5 116023860 to 116024885 1025 CpG island CpG island 16390
Tssr52834 5 116024229 to 116024279 50 - TSS region transcription start site region 52834
Tssr52835 5 116024329 to 116024340 11 - TSS region transcription start site region 52835
Tssr52836 5 116024357 to 116024370 13 - TSS region transcription start site region 52836
Tssr52837 5 116024378 to 116024438 60 - TSS region transcription start site region 52837
Tssr52838 5 116024441 to 116024450 9 - TSS region transcription start site region 52838
Tssr52839 5 116024452 to 116024468 16 - TSS region transcription start site region 52839
Tssr52840 5 116024475 to 116024490 15 - TSS region transcription start site region 52840
Gm13842 5 116026411 to 116029230 2819 - lincRNA gene predicted gene 13842
Gm17420 5 116032146 to 116032313 167 - pseudogene predicted gene, 17420
Tmem233 5 116040532 to 116083246 42714 - protein coding gene transmembrane protein 233
Tssr48341 5 116058842 to 116058844 2 + TSS region transcription start site region 48341
Cpgi16391 5 116082754 to 116083224 470 CpG island CpG island 16391
Tssr52841 5 116083180 to 116083189 9 - TSS region transcription start site region 52841
Tssr52842 5 116083195 to 116083217 22 - TSS region transcription start site region 52842
Tssr52843 5 116083234 to 116083251 17 - TSS region transcription start site region 52843
Tssr52844 5 116083259 to 116083276 17 - TSS region transcription start site region 52844
Tssr52845 5 116083289 to 116083297 8 - TSS region transcription start site region 52845
C330018A13Rik 5 116123334 to 116128608 5274 + antisense lncRNA gene RIKEN cDNA C330018A13 gene
Tssr48342 5 116123590 to 116123637 47 + TSS region transcription start site region 48342
Ccdc60 5 116125581 to 116289004 163423 - protein coding gene coiled-coil domain containing 60
Cpgi16392 5 116144380 to 116144563 183 CpG island CpG island 16392
Gm36552 5 116192711 to 116206698 13987 + lncRNA gene predicted gene, 36552
Tssr48343 5 116230448 to 116230449 1 + TSS region transcription start site region 48343
Gm36502 5 116232070 to 116238073 6003 + lncRNA gene predicted gene, 36502
Gm14507 5 116243706 to 116254953 11247 + antisense lncRNA gene predicted gene 14507
Gm13837 5 116257661 to 116258644 983 + antisense lncRNA gene predicted gene 13837
Tssr52846 5 116288944 to 116288977 33 - TSS region transcription start site region 52846
Tssr52847 5 116288978 to 116288999 21 - TSS region transcription start site region 52847
Tssr52848 5 116289000 to 116289009 9 - TSS region transcription start site region 52848
Gm13839 5 116301300 to 116303514 2214 + lincRNA gene predicted gene 13839
Gm13838 5 116305682 to 116309360 3678 - lincRNA gene predicted gene 13838
B230112J18Rik 5 116312360 to 116318275 5915 + lincRNA gene RIKEN cDNA B230112J18 gene
Cpgi16393 5 116350842 to 116351020 178 CpG island CpG island 16393
4933424N20Rik 5 116380173 to 116381635 1462 - unclassified gene RIKEN cDNA 4933424N20 gene
Cpgi16394 5 116381279 to 116381438 159 CpG island CpG island 16394
Tssr52849 5 116381599 to 116381604 5 - TSS region transcription start site region 52849
Tssr52850 5 116381620 to 116381638 18 - TSS region transcription start site region 52850
Tssr52851 5 116381641 to 116381644 3 - TSS region transcription start site region 52851
Tssr52852 5 116381648 to 116381653 5 - TSS region transcription start site region 52852
Tssr52853 5 116382703 to 116382707 4 - TSS region transcription start site region 52853
4930562A09Rik 5 116390678 to 116392800 2122 - lincRNA gene RIKEN cDNA 4930562A09 gene
Tssr52854 5 116392743 to 116392750 7 - TSS region transcription start site region 52854
Tssr52855 5 116392766 to 116392773 7 - TSS region transcription start site region 52855
Tssr48344 5 116406790 to 116406801 11 + TSS region transcription start site region 48344
Hspb8 5 116408491 to 116422864 14373 - protein coding gene heat shock protein 8
Tssr52856 5 116408840 to 116408865 25 - TSS region transcription start site region 52856
Gm36841 5 116412423 to 116418761 6338 + lncRNA gene predicted gene, 36841
Cpgi16395 5 116422231 to 116422559 328 CpG island CpG island 16395
Tssr52857 5 116422644 to 116422686 42 - TSS region transcription start site region 52857
Tssr52858 5 116422739 to 116422780 41 - TSS region transcription start site region 52858
Tssr52859 5 116422792 to 116422807 15 - TSS region transcription start site region 52859
Tssr52860 5 116422824 to 116422836 12 - TSS region transcription start site region 52860
Tssr52861 5 116422858 to 116422873 15 - TSS region transcription start site region 52861
Tssr52862 5 116422951 to 116423025 74 - TSS region transcription start site region 52862
Gm42009 5 116423057 to 116426000 2943 + lncRNA gene predicted gene, 42009
Tssr48345 5 116438712 to 116438723 11 + TSS region transcription start site region 48345
Srrm4os 5 116438722 to 116465487 26765 + antisense lncRNA gene serine/arginine repetitive matrix 4, opposite strand
Srrm4 5 116439275 to 116591817 152542 - protein coding gene serine/arginine repetitive matrix 4
Tssr52863 5 116441285 to 116441296 11 - TSS region transcription start site region 52863
Cpgi16396 5 116444439 to 116444859 420 CpG island CpG island 16396
Cpgi16397 5 116446531 to 116446891 360 CpG island CpG island 16397
Tssr52864 5 116446707 to 116446740 33 - TSS region transcription start site region 52864
Cpgi16398 5 116453475 to 116453770 295 CpG island CpG island 16398
Gm42853 5 116456098 to 116457484 1386 - unclassified gene predicted gene 42853
4933430H06Rik 5 116501374 to 116502716 1342 - unclassified gene RIKEN cDNA 4933430H06 gene
Cpgi16399 5 116510686 to 116511107 421 CpG island CpG island 16399
Tssr52865 5 116545045 to 116545055 10 - TSS region transcription start site region 52865
Tssr52866 5 116545850 to 116545880 30 - TSS region transcription start site region 52866
Cpgi16400 5 116571580 to 116571740 160 CpG island CpG island 16400
Gm42854 5 116572527 to 116573495 968 - sense intronic lncRNA gene predicted gene 42854
Cpgi16401 5 116591005 to 116592580 1575 CpG island CpG island 16401
Tssr52867 5 116591472 to 116591483 11 - TSS region transcription start site region 52867
Tssr52868 5 116591782 to 116591793 11 - TSS region transcription start site region 52868
Tssr52869 5 116591811 to 116591830 19 - TSS region transcription start site region 52869
Tssr52870 5 116591858 to 116591865 7 - TSS region transcription start site region 52870
D5Mit209 5 116622324 to 116622648 324 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 209
Gstm2-ps1 5 116632908 to 116633564 656 - pseudogene glutathione S-transferase mu 2 (muscle), pseudogene 1
Tssr52871 5 116633015 to 116633019 4 - TSS region transcription start site region 52871
Tssr52872 5 116633605 to 116633607 2 - TSS region transcription start site region 52872
Tssr48346 5 116635293 to 116635299 6 + TSS region transcription start site region 48346
Gm43122 5 116642736 to 116830554 187818 - lincRNA gene predicted gene 43122
D5Mit405 5 116738442 to 116738565 123 DNA segment DNA Segment, Chr 5 Massachusetts Institute of Technology 405
Elmaz1 5 116738565 to 97871790 -18866775 QTL elevated maze behavior 1
Tssr48347 5 116802691 to 116802699 8 + TSS region transcription start site region 48347
Gm29843 5 116802696 to 116804286 1590 + lncRNA gene predicted gene, 29843
Tssr48348 5 116802718 to 116802723 5 + TSS region transcription start site region 48348
Tssr48349 5 116802761 to 116802772 11 + TSS region transcription start site region 48349
Gm29926 5 116811231 to 116813828 2597 + lincRNA gene predicted gene, 29926
4930569F06Rik 5 116821454 to 116821886 432 + unclassified non-coding RNA gene RIKEN cDNA 4930569F06 gene