MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 5:115602953-115702966

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gcn1	5	115565254 to 115622654	57400	+	protein coding gene	GCN1 activator of EIF2AK4
Tssr48318	5	115605642 to 115605651	9	+	TSS region	transcription start site region 48318
Tssr48319	5	115610443 to 115610444	1	+	TSS region	transcription start site region 48319
Tssr48320	5	115611841 to 115611853	12	+	TSS region	transcription start site region 48320
1110006O24Rik	5	115631049 to 115631816	767	-	lincRNA gene	RIKEN cDNA 1110006O24 gene
Cpgi16384	5	115631170 to 115632835	1665		CpG island	CpG island 16384
Tssr52821	5	115631780 to 115631829	49	-	TSS region	transcription start site region 52821
Tssr48321	5	115631883 to 115631895	12	+	TSS region	transcription start site region 48321
Rab35	5	115631899 to 115647158	15259	+	protein coding gene	RAB35, member RAS oncogene family
Tssr48322	5	115631902 to 115631933	31	+	TSS region	transcription start site region 48322
Tssr48323	5	115631982 to 115632033	51	+	TSS region	transcription start site region 48323
Tssr48324	5	115632036 to 115632054	18	+	TSS region	transcription start site region 48324
Mir7030	5	115645573 to 115645632	59	+	miRNA gene	microRNA 7030
Bicdl1	5	115648175 to 115731621	83446	-	protein coding gene	BICD family like cargo adaptor 1
Cpgi16385	5	115652682 to 115653362	680		CpG island	CpG island 16385
Tssr52822	5	115652826 to 115652829	3	-	TSS region	transcription start site region 52822
Tssr52823	5	115652953 to 115652966	13	-	TSS region	transcription start site region 52823
Tssr52824	5	115652974 to 115652992	18	-	TSS region	transcription start site region 52824