Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115478289-116688297

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202 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sirt4 5 115478010 to 115484725 6715 - protein coding gene sirtuin 4
Tssr52806 5 115479644 to 115479651 7 - TSS region transcription start site region 52806
Cpgi16372 5 115480099 to 115480527 428 CpG island CpG island 16372
Cpgi16373 5 115482600 to 115483090 490 CpG island CpG island 16373
Cpgi16374 5 115484222 to 115484561 339 CpG island CpG island 16374
Tssr52807 5 115484351 to 115484387 36 - TSS region transcription start site region 52807
Gm42007 5 115484474 to 115486693 2219 + lncRNA gene predicted gene, 42007
Tssr48291 5 115484483 to 115484520 37 + TSS region transcription start site region 48291
Tssr52808 5 115488922 to 115488932 10 - TSS region transcription start site region 52808
Tssr52809 5 115488944 to 115488949 5 - TSS region transcription start site region 52809
Tssr48292 5 115489310 to 115489322 12 + TSS region transcription start site region 48292
Tssr48293 5 115489456 to 115489458 2 + TSS region transcription start site region 48293
Gm24265 5 115489459 to 115489599 140 + snRNA gene predicted gene, 24265
Tssr48294 5 115489531 to 115489534 3 + TSS region transcription start site region 48294
Tssr52810 5 115489553 to 115489583 30 - TSS region transcription start site region 52810
Cpgi16375 5 115489821 to 115490417 596 CpG island CpG island 16375
Tssr52811 5 115489830 to 115489840 10 - TSS region transcription start site region 52811
Tssr52812 5 115489943 to 115489953 10 - TSS region transcription start site region 52812
Tssr52813 5 115489955 to 115489981 26 - TSS region transcription start site region 52813
Tssr52814 5 115489991 to 115490036 45 - TSS region transcription start site region 52814
Tssr52815 5 115490185 to 115490204 19 - TSS region transcription start site region 52815
Tssr48295 5 115490231 to 115490251 20 + TSS region transcription start site region 48295
Gm24407 5 115490254 to 115490394 140 + snRNA gene predicted gene, 24407
Tssr48296 5 115490326 to 115490329 3 + TSS region transcription start site region 48296
Tssr52816 5 115490344 to 115490378 34 - TSS region transcription start site region 52816
Cpgi16376 5 115491791 to 115492398 607 CpG island CpG island 16376
Tssr52817 5 115491886 to 115491902 16 - TSS region transcription start site region 52817
Gm13836 5 115491955 to 115492455 500 - pseudogene predicted gene 13836
Tssr48297 5 115491970 to 115491988 18 + TSS region transcription start site region 48297
Tssr48298 5 115492365 to 115492381 16 + TSS region transcription start site region 48298
Tssr48299 5 115499748 to 115499751 3 + TSS region transcription start site region 48299
Tssr52818 5 115500462 to 115500495 33 - TSS region transcription start site region 52818
Tssr48300 5 115500642 to 115500649 7 + TSS region transcription start site region 48300
Tssr1611 5 115500667 to 115500676 9 + TSS region transcription start site region 1611
Cpgi16377 5 115506365 to 115507438 1073 CpG island CpG island 16377
Tssr48301 5 115506668 to 115506753 85 + TSS region transcription start site region 48301
Pxn 5 115506676 to 115555987 49311 + protein coding gene paxillin
Gm13840 5 115515263 to 115515947 684 + sense intronic lncRNA gene predicted gene 13840
Cpgi16378 5 115516178 to 115516500 322 CpG island CpG island 16378
Tssr48302 5 115519659 to 115519679 20 + TSS region transcription start site region 48302
Tssr48303 5 115519684 to 115519746 62 + TSS region transcription start site region 48303
Cpgi16379 5 115520351 to 115520578 227 CpG island CpG island 16379
Tssr52819 5 115520641 to 115520646 5 - TSS region transcription start site region 52819
Tssr52820 5 115535773 to 115535794 21 - TSS region transcription start site region 52820
Tssr48304 5 115542906 to 115542937 31 + TSS region transcription start site region 48304
Tssr48305 5 115542944 to 115542956 12 + TSS region transcription start site region 48305
Tssr48306 5 115542972 to 115543007 35 + TSS region transcription start site region 48306
Tssr48307 5 115544082 to 115544100 18 + TSS region transcription start site region 48307
Tssr48308 5 115544106 to 115544145 39 + TSS region transcription start site region 48308
Tssr48309 5 115544219 to 115544254 35 + TSS region transcription start site region 48309
Tssr48310 5 115544341 to 115544378 37 + TSS region transcription start site region 48310
Tssr48311 5 115544398 to 115544424 26 + TSS region transcription start site region 48311
Tssr48312 5 115545272 to 115545315 43 + TSS region transcription start site region 48312
Cpgi16380 5 115553927 to 115554099 172 CpG island CpG island 16380
Tssr48313 5 115557312 to 115557316 4 + TSS region transcription start site region 48313
Cpgi16381 5 115559192 to 115560081 889 CpG island CpG island 16381
Rplp0 5 115559467 to 115563727 4260 + protein coding gene ribosomal protein, large, P0
Tssr48314 5 115559488 to 115559499 11 + TSS region transcription start site region 48314
Tssr48315 5 115559505 to 115559519 14 + TSS region transcription start site region 48315
Cpgi16382 5 115564716 to 115566004 1288 CpG island CpG island 16382
Gcn1 5 115565254 to 115622654 57400 + protein coding gene GCN1 activator of EIF2AK4
Tssr48316 5 115565256 to 115565281 25 + TSS region transcription start site region 48316
Tssr48317 5 115575148 to 115575207 59 + TSS region transcription start site region 48317
Mir7029 5 115580949 to 115581009 60 + miRNA gene microRNA 7029
Cpgi16383 5 115602399 to 115602814 415 CpG island CpG island 16383
Tssr48318 5 115605642 to 115605651 9 + TSS region transcription start site region 48318
Tssr48319 5 115610443 to 115610444 1 + TSS region transcription start site region 48319
Tssr48320 5 115611841 to 115611853 12 + TSS region transcription start site region 48320
1110006O24Rik 5 115631049 to 115631816 767 - lincRNA gene RIKEN cDNA 1110006O24 gene
Cpgi16384 5 115631170 to 115632835 1665 CpG island CpG island 16384
Tssr52821 5 115631780 to 115631829 49 - TSS region transcription start site region 52821
Tssr48321 5 115631883 to 115631895 12 + TSS region transcription start site region 48321
Rab35 5 115631899 to 115647158 15259 + protein coding gene RAB35, member RAS oncogene family
Tssr48322 5 115631902 to 115631933 31 + TSS region transcription start site region 48322
Tssr48323 5 115631982 to 115632033 51 + TSS region transcription start site region 48323
Tssr48324 5 115632036 to 115632054 18 + TSS region transcription start site region 48324
Mir7030 5 115645573 to 115645632 59 + miRNA gene microRNA 7030
Bicdl1 5 115648175 to 115731621 83446 - protein coding gene BICD family like cargo adaptor 1
Cpgi16385 5 115652682 to 115653362 680 CpG island CpG island 16385
Tssr52822 5 115652826 to 115652829 3 - TSS region transcription start site region 52822
Tssr52823 5 115652953 to 115652966 13 - TSS region transcription start site region 52823
Tssr52824 5 115652974 to 115652992 18 - TSS region transcription start site region 52824
Cpgi16386 5 115730724 to 115733050 2326 CpG island CpG island 16386
Tssr52825 5 115732211 to 115732256 45 - TSS region transcription start site region 52825
Tssr52826 5 115732257 to 115732283 26 - TSS region transcription start site region 52826
Tssr52827 5 115732481 to 115732496 15 - TSS region transcription start site region 52827
Tssr52828 5 115754915 to 115754930 15 - TSS region transcription start site region 52828
Gm13841 5 115801677 to 115802159 482 - pseudogene predicted gene 13841
Cpgi16387 5 115844707 to 115845402 695 CpG island CpG island 16387
Cit 5 115845224 to 116008586 163362 + protein coding gene citron
Tssr48325 5 115845229 to 115845301 72 + TSS region transcription start site region 48325
Tssr48326 5 115859036 to 115859074 38 + TSS region transcription start site region 48326
Tssr48327 5 115859123 to 115859132 9 + TSS region transcription start site region 48327
D5Mit187 5 115863998 to 115864139 141 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 187
Tssr48328 5 115866483 to 115866488 5 + TSS region transcription start site region 48328
Gm42473 5 115870144 to 115872434 2290 + unclassified gene predicted gene 42473
Gm42008 5 115901533 to 115907321 5788 - lncRNA gene predicted gene, 42008
Gm42471 5 115902430 to 115904294 1864 + unclassified gene predicted gene 42471
Cpgi16388 5 115907101 to 115907765 664 CpG island CpG island 16388
Tssr48329 5 115907448 to 115907508 60 + TSS region transcription start site region 48329
Tssr48330 5 115907535 to 115907550 15 + TSS region transcription start site region 48330
Tssr48331 5 115908514 to 115908522 8 + TSS region transcription start site region 48331
Tssr48332 5 115908523 to 115908538 15 + TSS region transcription start site region 48332
Tssr48333 5 115908695 to 115908734 39 + TSS region transcription start site region 48333
Gm36185 5 115918631 to 115923636 5005 - lncRNA gene predicted gene, 36185
Tssr52829 5 115922156 to 115922181 25 - TSS region transcription start site region 52829
Tssr48334 5 115945308 to 115945341 33 + TSS region transcription start site region 48334
Tssr48335 5 115947926 to 115947947 21 + TSS region transcription start site region 48335
Tssr48336 5 115974854 to 115974856 2 + TSS region transcription start site region 48336
Tssr48337 5 115989815 to 115989820 5 + TSS region transcription start site region 48337
Cpgi16389 5 115994225 to 115994441 216 CpG island CpG island 16389
Tssr48338 5 116006777 to 116006781 4 + TSS region transcription start site region 48338
Tssr48339 5 116006831 to 116006835 4 + TSS region transcription start site region 48339
Gm14508 5 116009316 to 116016105 6789 + antisense lncRNA gene predicted gene 14508
Tssr48340 5 116009323 to 116009330 7 + TSS region transcription start site region 48340
Prkab1 5 116013586 to 116024503 10917 - protein coding gene protein kinase, AMP-activated, beta 1 non-catalytic subunit
Tssr52830 5 116021684 to 116021696 12 - TSS region transcription start site region 52830
Tssr52831 5 116021703 to 116021714 11 - TSS region transcription start site region 52831
Tssr52832 5 116021732 to 116021745 13 - TSS region transcription start site region 52832
Tssr52833 5 116021769 to 116021779 10 - TSS region transcription start site region 52833
Cpgi16390 5 116023860 to 116024885 1025 CpG island CpG island 16390
Tssr52834 5 116024229 to 116024279 50 - TSS region transcription start site region 52834
Tssr52835 5 116024329 to 116024340 11 - TSS region transcription start site region 52835
Tssr52836 5 116024357 to 116024370 13 - TSS region transcription start site region 52836
Tssr52837 5 116024378 to 116024438 60 - TSS region transcription start site region 52837
Tssr52838 5 116024441 to 116024450 9 - TSS region transcription start site region 52838
Tssr52839 5 116024452 to 116024468 16 - TSS region transcription start site region 52839
Tssr52840 5 116024475 to 116024490 15 - TSS region transcription start site region 52840
Gm13842 5 116026411 to 116029230 2819 - lincRNA gene predicted gene 13842
Gm17420 5 116032146 to 116032313 167 - pseudogene predicted gene, 17420
Tmem233 5 116040532 to 116083246 42714 - protein coding gene transmembrane protein 233
Tssr48341 5 116058842 to 116058844 2 + TSS region transcription start site region 48341
Cpgi16391 5 116082754 to 116083224 470 CpG island CpG island 16391
Tssr52841 5 116083180 to 116083189 9 - TSS region transcription start site region 52841
Tssr52842 5 116083195 to 116083217 22 - TSS region transcription start site region 52842
Tssr52843 5 116083234 to 116083251 17 - TSS region transcription start site region 52843
Tssr52844 5 116083259 to 116083276 17 - TSS region transcription start site region 52844
Tssr52845 5 116083289 to 116083297 8 - TSS region transcription start site region 52845
C330018A13Rik 5 116123334 to 116128608 5274 + antisense lncRNA gene RIKEN cDNA C330018A13 gene
Tssr48342 5 116123590 to 116123637 47 + TSS region transcription start site region 48342
Ccdc60 5 116125581 to 116289004 163423 - protein coding gene coiled-coil domain containing 60
Cpgi16392 5 116144380 to 116144563 183 CpG island CpG island 16392
Gm36552 5 116192711 to 116206698 13987 + lncRNA gene predicted gene, 36552
Tssr48343 5 116230448 to 116230449 1 + TSS region transcription start site region 48343
Gm36502 5 116232070 to 116238073 6003 + lncRNA gene predicted gene, 36502
Gm14507 5 116243706 to 116254953 11247 + antisense lncRNA gene predicted gene 14507
Gm13837 5 116257661 to 116258644 983 + antisense lncRNA gene predicted gene 13837
Tssr52846 5 116288944 to 116288977 33 - TSS region transcription start site region 52846
Tssr52847 5 116288978 to 116288999 21 - TSS region transcription start site region 52847
Tssr52848 5 116289000 to 116289009 9 - TSS region transcription start site region 52848
Gm13839 5 116301300 to 116303514 2214 + lincRNA gene predicted gene 13839
Gm13838 5 116305682 to 116309360 3678 - lincRNA gene predicted gene 13838
B230112J18Rik 5 116312360 to 116318275 5915 + lincRNA gene RIKEN cDNA B230112J18 gene
Cpgi16393 5 116350842 to 116351020 178 CpG island CpG island 16393
4933424N20Rik 5 116380173 to 116381635 1462 - unclassified gene RIKEN cDNA 4933424N20 gene
Cpgi16394 5 116381279 to 116381438 159 CpG island CpG island 16394
Tssr52849 5 116381599 to 116381604 5 - TSS region transcription start site region 52849
Tssr52850 5 116381620 to 116381638 18 - TSS region transcription start site region 52850
Tssr52851 5 116381641 to 116381644 3 - TSS region transcription start site region 52851
Tssr52852 5 116381648 to 116381653 5 - TSS region transcription start site region 52852
Tssr52853 5 116382703 to 116382707 4 - TSS region transcription start site region 52853
4930562A09Rik 5 116390678 to 116392800 2122 - lincRNA gene RIKEN cDNA 4930562A09 gene
Tssr52854 5 116392743 to 116392750 7 - TSS region transcription start site region 52854
Tssr52855 5 116392766 to 116392773 7 - TSS region transcription start site region 52855
Tssr48344 5 116406790 to 116406801 11 + TSS region transcription start site region 48344
Hspb8 5 116408491 to 116422864 14373 - protein coding gene heat shock protein 8
Tssr52856 5 116408840 to 116408865 25 - TSS region transcription start site region 52856
Gm36841 5 116412423 to 116418761 6338 + lncRNA gene predicted gene, 36841
Cpgi16395 5 116422231 to 116422559 328 CpG island CpG island 16395
Tssr52857 5 116422644 to 116422686 42 - TSS region transcription start site region 52857
Tssr52858 5 116422739 to 116422780 41 - TSS region transcription start site region 52858
Tssr52859 5 116422792 to 116422807 15 - TSS region transcription start site region 52859
Tssr52860 5 116422824 to 116422836 12 - TSS region transcription start site region 52860
Tssr52861 5 116422858 to 116422873 15 - TSS region transcription start site region 52861
Tssr52862 5 116422951 to 116423025 74 - TSS region transcription start site region 52862
Gm42009 5 116423057 to 116426000 2943 + lncRNA gene predicted gene, 42009
Tssr48345 5 116438712 to 116438723 11 + TSS region transcription start site region 48345
Srrm4os 5 116438722 to 116465487 26765 + antisense lncRNA gene serine/arginine repetitive matrix 4, opposite strand
Srrm4 5 116439275 to 116591817 152542 - protein coding gene serine/arginine repetitive matrix 4
Tssr52863 5 116441285 to 116441296 11 - TSS region transcription start site region 52863
Cpgi16396 5 116444439 to 116444859 420 CpG island CpG island 16396
Cpgi16397 5 116446531 to 116446891 360 CpG island CpG island 16397
Tssr52864 5 116446707 to 116446740 33 - TSS region transcription start site region 52864
Cpgi16398 5 116453475 to 116453770 295 CpG island CpG island 16398
Gm42853 5 116456098 to 116457484 1386 - unclassified gene predicted gene 42853
4933430H06Rik 5 116501374 to 116502716 1342 - unclassified gene RIKEN cDNA 4933430H06 gene
Cpgi16399 5 116510686 to 116511107 421 CpG island CpG island 16399
Tssr52865 5 116545045 to 116545055 10 - TSS region transcription start site region 52865
Tssr52866 5 116545850 to 116545880 30 - TSS region transcription start site region 52866
Cpgi16400 5 116571580 to 116571740 160 CpG island CpG island 16400
Gm42854 5 116572527 to 116573495 968 - sense intronic lncRNA gene predicted gene 42854
Cpgi16401 5 116591005 to 116592580 1575 CpG island CpG island 16401
Tssr52867 5 116591472 to 116591483 11 - TSS region transcription start site region 52867
Tssr52868 5 116591782 to 116591793 11 - TSS region transcription start site region 52868
Tssr52869 5 116591811 to 116591830 19 - TSS region transcription start site region 52869
Tssr52870 5 116591858 to 116591865 7 - TSS region transcription start site region 52870
D5Mit209 5 116622324 to 116622648 324 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 209
Gstm2-ps1 5 116632908 to 116633564 656 - pseudogene glutathione S-transferase mu 2 (muscle), pseudogene 1
Tssr52871 5 116633015 to 116633019 4 - TSS region transcription start site region 52871
Tssr52872 5 116633605 to 116633607 2 - TSS region transcription start site region 52872