Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115475642-115525649

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44 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr48290 5 115476867 to 115476871 4 + TSS region transcription start site region 48290
Sirt4 5 115478010 to 115484725 6715 - protein coding gene sirtuin 4
Tssr52806 5 115479644 to 115479651 7 - TSS region transcription start site region 52806
Cpgi16372 5 115480099 to 115480527 428 CpG island CpG island 16372
Cpgi16373 5 115482600 to 115483090 490 CpG island CpG island 16373
Cpgi16374 5 115484222 to 115484561 339 CpG island CpG island 16374
Tssr52807 5 115484351 to 115484387 36 - TSS region transcription start site region 52807
Gm42007 5 115484474 to 115486693 2219 + lncRNA gene predicted gene, 42007
Tssr48291 5 115484483 to 115484520 37 + TSS region transcription start site region 48291
Tssr52808 5 115488922 to 115488932 10 - TSS region transcription start site region 52808
Tssr52809 5 115488944 to 115488949 5 - TSS region transcription start site region 52809
Tssr48292 5 115489310 to 115489322 12 + TSS region transcription start site region 48292
Tssr48293 5 115489456 to 115489458 2 + TSS region transcription start site region 48293
Gm24265 5 115489459 to 115489599 140 + snRNA gene predicted gene, 24265
Tssr48294 5 115489531 to 115489534 3 + TSS region transcription start site region 48294
Tssr52810 5 115489553 to 115489583 30 - TSS region transcription start site region 52810
Cpgi16375 5 115489821 to 115490417 596 CpG island CpG island 16375
Tssr52811 5 115489830 to 115489840 10 - TSS region transcription start site region 52811
Tssr52812 5 115489943 to 115489953 10 - TSS region transcription start site region 52812
Tssr52813 5 115489955 to 115489981 26 - TSS region transcription start site region 52813
Tssr52814 5 115489991 to 115490036 45 - TSS region transcription start site region 52814
Tssr52815 5 115490185 to 115490204 19 - TSS region transcription start site region 52815
Tssr48295 5 115490231 to 115490251 20 + TSS region transcription start site region 48295
Gm24407 5 115490254 to 115490394 140 + snRNA gene predicted gene, 24407
Tssr48296 5 115490326 to 115490329 3 + TSS region transcription start site region 48296
Tssr52816 5 115490344 to 115490378 34 - TSS region transcription start site region 52816
Cpgi16376 5 115491791 to 115492398 607 CpG island CpG island 16376
Tssr52817 5 115491886 to 115491902 16 - TSS region transcription start site region 52817
Gm13836 5 115491955 to 115492455 500 - pseudogene predicted gene 13836
Tssr48297 5 115491970 to 115491988 18 + TSS region transcription start site region 48297
Tssr48298 5 115492365 to 115492381 16 + TSS region transcription start site region 48298
Tssr48299 5 115499748 to 115499751 3 + TSS region transcription start site region 48299
Tssr52818 5 115500462 to 115500495 33 - TSS region transcription start site region 52818
Tssr48300 5 115500642 to 115500649 7 + TSS region transcription start site region 48300
Tssr1611 5 115500667 to 115500676 9 + TSS region transcription start site region 1611
Cpgi16377 5 115506365 to 115507438 1073 CpG island CpG island 16377
Tssr48301 5 115506668 to 115506753 85 + TSS region transcription start site region 48301
Pxn 5 115506676 to 115555987 49311 + protein coding gene paxillin
Gm13840 5 115515263 to 115515947 684 + sense intronic lncRNA gene predicted gene 13840
Cpgi16378 5 115516178 to 115516500 322 CpG island CpG island 16378
Tssr48302 5 115519659 to 115519679 20 + TSS region transcription start site region 48302
Tssr48303 5 115519684 to 115519746 62 + TSS region transcription start site region 48303
Cpgi16379 5 115520351 to 115520578 227 CpG island CpG island 16379
Tssr52819 5 115520641 to 115520646 5 - TSS region transcription start site region 52819