Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115347399-115857814

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182 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cox6a1 5 115345654 to 115348955 3301 - protein coding gene cytochrome c oxidase subunit 6A1
Cpgi16368 5 115348222 to 115349468 1246 CpG island CpG island 16368
Tssr52793 5 115348596 to 115348628 32 - TSS region transcription start site region 52793
Tssr52794 5 115348652 to 115348663 11 - TSS region transcription start site region 52794
Tssr52795 5 115348712 to 115348738 26 - TSS region transcription start site region 52795
Tssr52796 5 115348953 to 115348959 6 - TSS region transcription start site region 52796
Gm42903 5 115349130 to 115353155 4025 + lincRNA gene predicted gene 42903
4930401G09Rik 5 115358700 to 115360123 1423 - lincRNA gene RIKEN cDNA 4930401G09 gene
Gm13832 5 115359078 to 115422863 63785 + lincRNA gene predicted gene 13832
Cpgi16369 5 115398263 to 115398928 665 CpG island CpG island 16369
Tssr48226 5 115404165 to 115404169 4 + TSS region transcription start site region 48226
Tssr48227 5 115404537 to 115404580 43 + TSS region transcription start site region 48227
A930005G22Rik 5 115420597 to 115422500 1903 - lncRNA gene RIKEN cDNA A930005G22 gene
Gm43231 5 115427218 to 115429475 2257 - unclassified gene predicted gene 43231
Cpgi16370 5 115429020 to 115430962 1942 CpG island CpG island 16370
Tssr52797 5 115429495 to 115429509 14 - TSS region transcription start site region 52797
Tssr48228 5 115429505 to 115429517 12 + TSS region transcription start site region 48228
Tssr48229 5 115429522 to 115429535 13 + TSS region transcription start site region 48229
Tssr48230 5 115429549 to 115429568 19 + TSS region transcription start site region 48230
Tssr48231 5 115429585 to 115429613 28 + TSS region transcription start site region 48231
Msi1 5 115429599 to 115455698 26099 + protein coding gene musashi RNA-binding protein 1
Tssr48232 5 115429622 to 115429683 61 + TSS region transcription start site region 48232
Tssr48233 5 115429696 to 115429707 11 + TSS region transcription start site region 48233
Tssr48234 5 115429720 to 115429734 14 + TSS region transcription start site region 48234
Tssr48235 5 115429759 to 115429770 11 + TSS region transcription start site region 48235
Tssr48236 5 115429944 to 115429992 48 + TSS region transcription start site region 48236
Tssr48237 5 115430317 to 115430336 19 + TSS region transcription start site region 48237
Tssr48238 5 115430580 to 115430629 49 + TSS region transcription start site region 48238
Tssr48239 5 115431359 to 115431382 23 + TSS region transcription start site region 48239
Tssr48240 5 115432007 to 115432018 11 + TSS region transcription start site region 48240
Tssr48241 5 115432020 to 115432040 20 + TSS region transcription start site region 48241
Tssr48242 5 115434974 to 115434986 12 + TSS region transcription start site region 48242
Tssr48243 5 115435000 to 115435029 29 + TSS region transcription start site region 48243
Tssr48244 5 115435040 to 115435064 24 + TSS region transcription start site region 48244
Tssr48245 5 115435076 to 115435089 13 + TSS region transcription start site region 48245
Tssr48246 5 115435094 to 115435105 11 + TSS region transcription start site region 48246
Tssr48247 5 115435127 to 115435144 17 + TSS region transcription start site region 48247
Tssr48248 5 115435245 to 115435256 11 + TSS region transcription start site region 48248
Tssr48249 5 115435416 to 115435435 19 + TSS region transcription start site region 48249
Tssr48250 5 115435445 to 115435452 7 + TSS region transcription start site region 48250
Tssr48251 5 115435482 to 115435498 16 + TSS region transcription start site region 48251
Tssr48252 5 115435518 to 115435521 3 + TSS region transcription start site region 48252
4930430O22Rik 5 115436066 to 115436644 578 - antisense lncRNA gene RIKEN cDNA 4930430O22 gene
Cpgi16371 5 115436395 to 115437131 736 CpG island CpG island 16371
Tssr52798 5 115436508 to 115436531 23 - TSS region transcription start site region 52798
Tssr48253 5 115436622 to 115436633 11 + TSS region transcription start site region 48253
Tssr48254 5 115436641 to 115436657 16 + TSS region transcription start site region 48254
Tssr48255 5 115436965 to 115436978 13 + TSS region transcription start site region 48255
Tssr48256 5 115438189 to 115438239 50 + TSS region transcription start site region 48256
Tssr48257 5 115443175 to 115443188 13 + TSS region transcription start site region 48257
Tssr48258 5 115448884 to 115448890 6 + TSS region transcription start site region 48258
Tssr48259 5 115450907 to 115450923 16 + TSS region transcription start site region 48259
Tssr48260 5 115453866 to 115453884 18 + TSS region transcription start site region 48260
Tssr48261 5 115453942 to 115453975 33 + TSS region transcription start site region 48261
Tssr48262 5 115454049 to 115454075 26 + TSS region transcription start site region 48262
Tssr48263 5 115454177 to 115454188 11 + TSS region transcription start site region 48263
Tssr48264 5 115454268 to 115454280 12 + TSS region transcription start site region 48264
Tssr48265 5 115454485 to 115454506 21 + TSS region transcription start site region 48265
Tssr48266 5 115454555 to 115454583 28 + TSS region transcription start site region 48266
Tssr48267 5 115455333 to 115455365 32 + TSS region transcription start site region 48267
Tssr52799 5 115464611 to 115464616 5 - TSS region transcription start site region 52799
Tssr48268 5 115465089 to 115465113 24 + TSS region transcription start site region 48268
Tssr48269 5 115466152 to 115466159 7 + TSS region transcription start site region 48269
Tssr48270 5 115466175 to 115466189 14 + TSS region transcription start site region 48270
Tssr48271 5 115466234 to 115466294 60 + TSS region transcription start site region 48271
Pla2g1b 5 115466262 to 115474722 8460 + protein coding gene phospholipase A2, group IB, pancreas
Tssr48272 5 115468445 to 115468458 13 + TSS region transcription start site region 48272
Tssr48273 5 115468476 to 115468489 13 + TSS region transcription start site region 48273
Tssr48274 5 115470781 to 115470793 12 + TSS region transcription start site region 48274
Tssr48275 5 115470811 to 115470828 17 + TSS region transcription start site region 48275
Tssr48276 5 115470836 to 115470841 5 + TSS region transcription start site region 48276
Tssr48277 5 115470853 to 115470865 12 + TSS region transcription start site region 48277
Tssr48278 5 115470870 to 115470880 10 + TSS region transcription start site region 48278
Tssr48279 5 115470888 to 115470917 29 + TSS region transcription start site region 48279
Tssr48280 5 115471691 to 115471693 2 + TSS region transcription start site region 48280
Tssr48281 5 115471981 to 115472003 22 + TSS region transcription start site region 48281
Tssr48282 5 115472008 to 115472015 7 + TSS region transcription start site region 48282
Tssr48283 5 115472022 to 115472080 58 + TSS region transcription start site region 48283
Tssr52800 5 115472055 to 115472117 62 - TSS region transcription start site region 52800
Tssr48284 5 115474504 to 115474515 11 + TSS region transcription start site region 48284
Tssr48285 5 115474518 to 115474575 57 + TSS region transcription start site region 48285
Tssr52801 5 115474548 to 115474568 20 - TSS region transcription start site region 52801
Tssr52802 5 115474573 to 115474578 5 - TSS region transcription start site region 52802
Tssr48286 5 115474578 to 115474581 3 + TSS region transcription start site region 48286
Tssr52803 5 115474590 to 115474600 10 - TSS region transcription start site region 52803
Tssr48287 5 115474612 to 115474638 26 + TSS region transcription start site region 48287
Tssr52804 5 115474641 to 115474670 29 - TSS region transcription start site region 52804
Tssr48288 5 115474648 to 115474662 14 + TSS region transcription start site region 48288
Tssr48289 5 115474673 to 115474682 9 + TSS region transcription start site region 48289
Tssr52805 5 115474710 to 115474717 7 - TSS region transcription start site region 52805
Tssr48290 5 115476867 to 115476871 4 + TSS region transcription start site region 48290
Sirt4 5 115478010 to 115484725 6715 - protein coding gene sirtuin 4
Tssr52806 5 115479644 to 115479651 7 - TSS region transcription start site region 52806
Cpgi16372 5 115480099 to 115480527 428 CpG island CpG island 16372
Cpgi16373 5 115482600 to 115483090 490 CpG island CpG island 16373
Cpgi16374 5 115484222 to 115484561 339 CpG island CpG island 16374
Tssr52807 5 115484351 to 115484387 36 - TSS region transcription start site region 52807
Gm42007 5 115484474 to 115486693 2219 + lncRNA gene predicted gene, 42007
Tssr48291 5 115484483 to 115484520 37 + TSS region transcription start site region 48291
Tssr52808 5 115488922 to 115488932 10 - TSS region transcription start site region 52808
Tssr52809 5 115488944 to 115488949 5 - TSS region transcription start site region 52809
Tssr48292 5 115489310 to 115489322 12 + TSS region transcription start site region 48292
Tssr48293 5 115489456 to 115489458 2 + TSS region transcription start site region 48293
Gm24265 5 115489459 to 115489599 140 + snRNA gene predicted gene, 24265
Tssr48294 5 115489531 to 115489534 3 + TSS region transcription start site region 48294
Tssr52810 5 115489553 to 115489583 30 - TSS region transcription start site region 52810
Cpgi16375 5 115489821 to 115490417 596 CpG island CpG island 16375
Tssr52811 5 115489830 to 115489840 10 - TSS region transcription start site region 52811
Tssr52812 5 115489943 to 115489953 10 - TSS region transcription start site region 52812
Tssr52813 5 115489955 to 115489981 26 - TSS region transcription start site region 52813
Tssr52814 5 115489991 to 115490036 45 - TSS region transcription start site region 52814
Tssr52815 5 115490185 to 115490204 19 - TSS region transcription start site region 52815
Tssr48295 5 115490231 to 115490251 20 + TSS region transcription start site region 48295
Gm24407 5 115490254 to 115490394 140 + snRNA gene predicted gene, 24407
Tssr48296 5 115490326 to 115490329 3 + TSS region transcription start site region 48296
Tssr52816 5 115490344 to 115490378 34 - TSS region transcription start site region 52816
Cpgi16376 5 115491791 to 115492398 607 CpG island CpG island 16376
Tssr52817 5 115491886 to 115491902 16 - TSS region transcription start site region 52817
Gm13836 5 115491955 to 115492455 500 - pseudogene predicted gene 13836
Tssr48297 5 115491970 to 115491988 18 + TSS region transcription start site region 48297
Tssr48298 5 115492365 to 115492381 16 + TSS region transcription start site region 48298
Tssr48299 5 115499748 to 115499751 3 + TSS region transcription start site region 48299
Tssr52818 5 115500462 to 115500495 33 - TSS region transcription start site region 52818
Tssr48300 5 115500642 to 115500649 7 + TSS region transcription start site region 48300
Tssr1611 5 115500667 to 115500676 9 + TSS region transcription start site region 1611
Cpgi16377 5 115506365 to 115507438 1073 CpG island CpG island 16377
Tssr48301 5 115506668 to 115506753 85 + TSS region transcription start site region 48301
Pxn 5 115506676 to 115555987 49311 + protein coding gene paxillin
Gm13840 5 115515263 to 115515947 684 + sense intronic lncRNA gene predicted gene 13840
Cpgi16378 5 115516178 to 115516500 322 CpG island CpG island 16378
Tssr48302 5 115519659 to 115519679 20 + TSS region transcription start site region 48302
Tssr48303 5 115519684 to 115519746 62 + TSS region transcription start site region 48303
Cpgi16379 5 115520351 to 115520578 227 CpG island CpG island 16379
Tssr52819 5 115520641 to 115520646 5 - TSS region transcription start site region 52819
Tssr52820 5 115535773 to 115535794 21 - TSS region transcription start site region 52820
Tssr48304 5 115542906 to 115542937 31 + TSS region transcription start site region 48304
Tssr48305 5 115542944 to 115542956 12 + TSS region transcription start site region 48305
Tssr48306 5 115542972 to 115543007 35 + TSS region transcription start site region 48306
Tssr48307 5 115544082 to 115544100 18 + TSS region transcription start site region 48307
Tssr48308 5 115544106 to 115544145 39 + TSS region transcription start site region 48308
Tssr48309 5 115544219 to 115544254 35 + TSS region transcription start site region 48309
Tssr48310 5 115544341 to 115544378 37 + TSS region transcription start site region 48310
Tssr48311 5 115544398 to 115544424 26 + TSS region transcription start site region 48311
Tssr48312 5 115545272 to 115545315 43 + TSS region transcription start site region 48312
Cpgi16380 5 115553927 to 115554099 172 CpG island CpG island 16380
Tssr48313 5 115557312 to 115557316 4 + TSS region transcription start site region 48313
Cpgi16381 5 115559192 to 115560081 889 CpG island CpG island 16381
Rplp0 5 115559467 to 115563727 4260 + protein coding gene ribosomal protein, large, P0
Tssr48314 5 115559488 to 115559499 11 + TSS region transcription start site region 48314
Tssr48315 5 115559505 to 115559519 14 + TSS region transcription start site region 48315
Cpgi16382 5 115564716 to 115566004 1288 CpG island CpG island 16382
Gcn1 5 115565254 to 115622654 57400 + protein coding gene GCN1 activator of EIF2AK4
Tssr48316 5 115565256 to 115565281 25 + TSS region transcription start site region 48316
Tssr48317 5 115575148 to 115575207 59 + TSS region transcription start site region 48317
Mir7029 5 115580949 to 115581009 60 + miRNA gene microRNA 7029
Cpgi16383 5 115602399 to 115602814 415 CpG island CpG island 16383
Tssr48318 5 115605642 to 115605651 9 + TSS region transcription start site region 48318
Tssr48319 5 115610443 to 115610444 1 + TSS region transcription start site region 48319
Tssr48320 5 115611841 to 115611853 12 + TSS region transcription start site region 48320
1110006O24Rik 5 115631049 to 115631816 767 - lincRNA gene RIKEN cDNA 1110006O24 gene
Cpgi16384 5 115631170 to 115632835 1665 CpG island CpG island 16384
Tssr52821 5 115631780 to 115631829 49 - TSS region transcription start site region 52821
Tssr48321 5 115631883 to 115631895 12 + TSS region transcription start site region 48321
Rab35 5 115631899 to 115647158 15259 + protein coding gene RAB35, member RAS oncogene family
Tssr48322 5 115631902 to 115631933 31 + TSS region transcription start site region 48322
Tssr48323 5 115631982 to 115632033 51 + TSS region transcription start site region 48323
Tssr48324 5 115632036 to 115632054 18 + TSS region transcription start site region 48324
Mir7030 5 115645573 to 115645632 59 + miRNA gene microRNA 7030
Bicdl1 5 115648175 to 115731621 83446 - protein coding gene BICD family like cargo adaptor 1
Cpgi16385 5 115652682 to 115653362 680 CpG island CpG island 16385
Tssr52822 5 115652826 to 115652829 3 - TSS region transcription start site region 52822
Tssr52823 5 115652953 to 115652966 13 - TSS region transcription start site region 52823
Tssr52824 5 115652974 to 115652992 18 - TSS region transcription start site region 52824
Cpgi16386 5 115730724 to 115733050 2326 CpG island CpG island 16386
Tssr52825 5 115732211 to 115732256 45 - TSS region transcription start site region 52825
Tssr52826 5 115732257 to 115732283 26 - TSS region transcription start site region 52826
Tssr52827 5 115732481 to 115732496 15 - TSS region transcription start site region 52827
Tssr52828 5 115754915 to 115754930 15 - TSS region transcription start site region 52828
Gm13841 5 115801677 to 115802159 482 - pseudogene predicted gene 13841
Cpgi16387 5 115844707 to 115845402 695 CpG island CpG island 16387
Cit 5 115845224 to 116008586 163362 + protein coding gene citron
Tssr48325 5 115845229 to 115845301 72 + TSS region transcription start site region 48325