Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115259078-115522863

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rnf10 5 115241770 to 115272895 31125 - protein coding gene ring finger protein 10
Gm13831 5 115263093 to 115263394 301 + pseudogene predicted gene 13831
Tssr52771 5 115267178 to 115267181 3 - TSS region transcription start site region 52771
D5Mit318 5 115271579 to 115271655 76 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 318
Cpgi16362 5 115272006 to 115273041 1035 CpG island CpG island 16362
Tssr52772 5 115272381 to 115272441 60 - TSS region transcription start site region 52772
Tssr52773 5 115272485 to 115272524 39 - TSS region transcription start site region 52773
Tssr52774 5 115272883 to 115272903 20 - TSS region transcription start site region 52774
Cpgi16363 5 115279382 to 115280378 996 CpG island CpG island 16363
Coq5 5 115279666 to 115296972 17306 + protein coding gene coenzyme Q5 methyltransferase
Tssr48210 5 115279673 to 115279716 43 + TSS region transcription start site region 48210
Tssr48211 5 115279728 to 115279739 11 + TSS region transcription start site region 48211
Gm13829 5 115291763 to 115291900 137 - pseudogene predicted gene 13829
Dynll1 5 115297110 to 115300990 3880 - protein coding gene dynein light chain LC8-type 1
Tssr52775 5 115298774 to 115298793 19 - TSS region transcription start site region 52775
Cpgi16364 5 115300245 to 115301621 1376 CpG island CpG island 16364
Tssr52776 5 115300551 to 115300564 13 - TSS region transcription start site region 52776
Tssr52777 5 115300927 to 115300944 17 - TSS region transcription start site region 52777
Tssr52778 5 115300957 to 115300968 11 - TSS region transcription start site region 52778
Tssr48212 5 115301111 to 115301174 63 + TSS region transcription start site region 48212
Gm13830 5 115301120 to 115319208 18088 + lincRNA gene predicted gene 13830
Tssr52779 5 115312898 to 115312899 1 - TSS region transcription start site region 52779
Tssr48213 5 115312994 to 115313025 31 + TSS region transcription start site region 48213
Tssr52780 5 115313760 to 115313772 12 - TSS region transcription start site region 52780
Cpgi16365 5 115319520 to 115319888 368 CpG island CpG island 16365
Cpgi16366 5 115326644 to 115328277 1633 CpG island CpG island 16366
Tssr52781 5 115326967 to 115326981 14 - TSS region transcription start site region 52781
Tssr52782 5 115326984 to 115327016 32 - TSS region transcription start site region 52782
Tssr48214 5 115327059 to 115327070 11 + TSS region transcription start site region 48214
Tssr48215 5 115327125 to 115327199 74 + TSS region transcription start site region 48215
Srsf9 5 115327177 to 115333080 5903 + protein coding gene serine/arginine-rich splicing factor 9
Tssr48216 5 115327201 to 115327267 66 + TSS region transcription start site region 48216
Tssr48217 5 115327274 to 115327283 9 + TSS region transcription start site region 48217
Tssr48218 5 115327644 to 115327677 33 + TSS region transcription start site region 48218
Tssr48219 5 115327723 to 115327734 11 + TSS region transcription start site region 48219
Tssr48220 5 115332721 to 115332793 72 + TSS region transcription start site region 48220
Tssr48221 5 115332858 to 115332872 14 + TSS region transcription start site region 48221
Gatc 5 115333242 to 115341161 7919 - protein coding gene glutamyl-tRNA(Gln) amidotransferase, subunit C
Tssr52783 5 115334029 to 115334064 35 - TSS region transcription start site region 52783
Tssr52784 5 115334068 to 115334095 27 - TSS region transcription start site region 52784
Tssr52785 5 115334098 to 115334169 71 - TSS region transcription start site region 52785
Tssr52786 5 115334224 to 115334240 16 - TSS region transcription start site region 52786
Tssr52787 5 115334269 to 115334280 11 - TSS region transcription start site region 52787
Tssr52788 5 115334479 to 115334498 19 - TSS region transcription start site region 52788
Tssr52789 5 115334516 to 115334531 15 - TSS region transcription start site region 52789
Cpgi16367 5 115340735 to 115341659 924 CpG island CpG island 16367
Tssr52790 5 115341112 to 115341139 27 - TSS region transcription start site region 52790
Tssr52791 5 115341142 to 115341191 49 - TSS region transcription start site region 52791
Tssr52792 5 115341195 to 115341211 16 - TSS region transcription start site region 52792
Tssr48222 5 115341225 to 115341270 45 + TSS region transcription start site region 48222
Triap1 5 115341247 to 115343552 2305 + protein coding gene TP53 regulated inhibitor of apoptosis 1
Tssr48223 5 115341288 to 115341297 9 + TSS region transcription start site region 48223
Tssr48224 5 115341315 to 115341324 9 + TSS region transcription start site region 48224
Cox6a1 5 115345654 to 115348955 3301 - protein coding gene cytochrome c oxidase subunit 6A1
Tssr48225 5 115345826 to 115345856 30 + TSS region transcription start site region 48225
Cpgi16368 5 115348222 to 115349468 1246 CpG island CpG island 16368
Tssr52793 5 115348596 to 115348628 32 - TSS region transcription start site region 52793
Tssr52794 5 115348652 to 115348663 11 - TSS region transcription start site region 52794
Tssr52795 5 115348712 to 115348738 26 - TSS region transcription start site region 52795
Tssr52796 5 115348953 to 115348959 6 - TSS region transcription start site region 52796
Gm42903 5 115349130 to 115353155 4025 + lincRNA gene predicted gene 42903
4930401G09Rik 5 115358700 to 115360123 1423 - lincRNA gene RIKEN cDNA 4930401G09 gene
Gm13832 5 115359078 to 115422863 63785 + lincRNA gene predicted gene 13832
Cpgi16369 5 115398263 to 115398928 665 CpG island CpG island 16369
Tssr48226 5 115404165 to 115404169 4 + TSS region transcription start site region 48226
Tssr48227 5 115404537 to 115404580 43 + TSS region transcription start site region 48227
A930005G22Rik 5 115420597 to 115422500 1903 - lncRNA gene RIKEN cDNA A930005G22 gene
Gm43231 5 115427218 to 115429475 2257 - unclassified gene predicted gene 43231
Cpgi16370 5 115429020 to 115430962 1942 CpG island CpG island 16370
Tssr52797 5 115429495 to 115429509 14 - TSS region transcription start site region 52797
Tssr48228 5 115429505 to 115429517 12 + TSS region transcription start site region 48228
Tssr48229 5 115429522 to 115429535 13 + TSS region transcription start site region 48229
Tssr48230 5 115429549 to 115429568 19 + TSS region transcription start site region 48230
Tssr48231 5 115429585 to 115429613 28 + TSS region transcription start site region 48231
Msi1 5 115429599 to 115455698 26099 + protein coding gene musashi RNA-binding protein 1
Tssr48232 5 115429622 to 115429683 61 + TSS region transcription start site region 48232
Tssr48233 5 115429696 to 115429707 11 + TSS region transcription start site region 48233
Tssr48234 5 115429720 to 115429734 14 + TSS region transcription start site region 48234
Tssr48235 5 115429759 to 115429770 11 + TSS region transcription start site region 48235
Tssr48236 5 115429944 to 115429992 48 + TSS region transcription start site region 48236
Tssr48237 5 115430317 to 115430336 19 + TSS region transcription start site region 48237
Tssr48238 5 115430580 to 115430629 49 + TSS region transcription start site region 48238
Tssr48239 5 115431359 to 115431382 23 + TSS region transcription start site region 48239
Tssr48240 5 115432007 to 115432018 11 + TSS region transcription start site region 48240
Tssr48241 5 115432020 to 115432040 20 + TSS region transcription start site region 48241
Tssr48242 5 115434974 to 115434986 12 + TSS region transcription start site region 48242
Tssr48243 5 115435000 to 115435029 29 + TSS region transcription start site region 48243
Tssr48244 5 115435040 to 115435064 24 + TSS region transcription start site region 48244
Tssr48245 5 115435076 to 115435089 13 + TSS region transcription start site region 48245
Tssr48246 5 115435094 to 115435105 11 + TSS region transcription start site region 48246
Tssr48247 5 115435127 to 115435144 17 + TSS region transcription start site region 48247
Tssr48248 5 115435245 to 115435256 11 + TSS region transcription start site region 48248
Tssr48249 5 115435416 to 115435435 19 + TSS region transcription start site region 48249
Tssr48250 5 115435445 to 115435452 7 + TSS region transcription start site region 48250
Tssr48251 5 115435482 to 115435498 16 + TSS region transcription start site region 48251
Tssr48252 5 115435518 to 115435521 3 + TSS region transcription start site region 48252
4930430O22Rik 5 115436066 to 115436644 578 - antisense lncRNA gene RIKEN cDNA 4930430O22 gene
Cpgi16371 5 115436395 to 115437131 736 CpG island CpG island 16371
Tssr52798 5 115436508 to 115436531 23 - TSS region transcription start site region 52798
Tssr48253 5 115436622 to 115436633 11 + TSS region transcription start site region 48253
Tssr48254 5 115436641 to 115436657 16 + TSS region transcription start site region 48254
Tssr48255 5 115436965 to 115436978 13 + TSS region transcription start site region 48255
Tssr48256 5 115438189 to 115438239 50 + TSS region transcription start site region 48256
Tssr48257 5 115443175 to 115443188 13 + TSS region transcription start site region 48257
Tssr48258 5 115448884 to 115448890 6 + TSS region transcription start site region 48258
Tssr48259 5 115450907 to 115450923 16 + TSS region transcription start site region 48259
Tssr48260 5 115453866 to 115453884 18 + TSS region transcription start site region 48260
Tssr48261 5 115453942 to 115453975 33 + TSS region transcription start site region 48261
Tssr48262 5 115454049 to 115454075 26 + TSS region transcription start site region 48262
Tssr48263 5 115454177 to 115454188 11 + TSS region transcription start site region 48263
Tssr48264 5 115454268 to 115454280 12 + TSS region transcription start site region 48264
Tssr48265 5 115454485 to 115454506 21 + TSS region transcription start site region 48265
Tssr48266 5 115454555 to 115454583 28 + TSS region transcription start site region 48266
Tssr48267 5 115455333 to 115455365 32 + TSS region transcription start site region 48267
Tssr52799 5 115464611 to 115464616 5 - TSS region transcription start site region 52799
Tssr48268 5 115465089 to 115465113 24 + TSS region transcription start site region 48268
Tssr48269 5 115466152 to 115466159 7 + TSS region transcription start site region 48269
Tssr48270 5 115466175 to 115466189 14 + TSS region transcription start site region 48270
Tssr48271 5 115466234 to 115466294 60 + TSS region transcription start site region 48271
Pla2g1b 5 115466262 to 115474722 8460 + protein coding gene phospholipase A2, group IB, pancreas
Tssr48272 5 115468445 to 115468458 13 + TSS region transcription start site region 48272
Tssr48273 5 115468476 to 115468489 13 + TSS region transcription start site region 48273
Tssr48274 5 115470781 to 115470793 12 + TSS region transcription start site region 48274
Tssr48275 5 115470811 to 115470828 17 + TSS region transcription start site region 48275
Tssr48276 5 115470836 to 115470841 5 + TSS region transcription start site region 48276
Tssr48277 5 115470853 to 115470865 12 + TSS region transcription start site region 48277
Tssr48278 5 115470870 to 115470880 10 + TSS region transcription start site region 48278
Tssr48279 5 115470888 to 115470917 29 + TSS region transcription start site region 48279
Tssr48280 5 115471691 to 115471693 2 + TSS region transcription start site region 48280
Tssr48281 5 115471981 to 115472003 22 + TSS region transcription start site region 48281
Tssr48282 5 115472008 to 115472015 7 + TSS region transcription start site region 48282
Tssr48283 5 115472022 to 115472080 58 + TSS region transcription start site region 48283
Tssr52800 5 115472055 to 115472117 62 - TSS region transcription start site region 52800
Tssr48284 5 115474504 to 115474515 11 + TSS region transcription start site region 48284
Tssr48285 5 115474518 to 115474575 57 + TSS region transcription start site region 48285
Tssr52801 5 115474548 to 115474568 20 - TSS region transcription start site region 52801
Tssr52802 5 115474573 to 115474578 5 - TSS region transcription start site region 52802
Tssr48286 5 115474578 to 115474581 3 + TSS region transcription start site region 48286
Tssr52803 5 115474590 to 115474600 10 - TSS region transcription start site region 52803
Tssr48287 5 115474612 to 115474638 26 + TSS region transcription start site region 48287
Tssr52804 5 115474641 to 115474670 29 - TSS region transcription start site region 52804
Tssr48288 5 115474648 to 115474662 14 + TSS region transcription start site region 48288
Tssr48289 5 115474673 to 115474682 9 + TSS region transcription start site region 48289
Tssr52805 5 115474710 to 115474717 7 - TSS region transcription start site region 52805
Tssr48290 5 115476867 to 115476871 4 + TSS region transcription start site region 48290
Sirt4 5 115478010 to 115484725 6715 - protein coding gene sirtuin 4
Tssr52806 5 115479644 to 115479651 7 - TSS region transcription start site region 52806
Cpgi16372 5 115480099 to 115480527 428 CpG island CpG island 16372
Cpgi16373 5 115482600 to 115483090 490 CpG island CpG island 16373
Cpgi16374 5 115484222 to 115484561 339 CpG island CpG island 16374
Tssr52807 5 115484351 to 115484387 36 - TSS region transcription start site region 52807
Gm42007 5 115484474 to 115486693 2219 + lncRNA gene predicted gene, 42007
Tssr48291 5 115484483 to 115484520 37 + TSS region transcription start site region 48291
Tssr52808 5 115488922 to 115488932 10 - TSS region transcription start site region 52808
Tssr52809 5 115488944 to 115488949 5 - TSS region transcription start site region 52809
Tssr48292 5 115489310 to 115489322 12 + TSS region transcription start site region 48292
Tssr48293 5 115489456 to 115489458 2 + TSS region transcription start site region 48293
Gm24265 5 115489459 to 115489599 140 + snRNA gene predicted gene, 24265
Tssr48294 5 115489531 to 115489534 3 + TSS region transcription start site region 48294
Tssr52810 5 115489553 to 115489583 30 - TSS region transcription start site region 52810
Cpgi16375 5 115489821 to 115490417 596 CpG island CpG island 16375
Tssr52811 5 115489830 to 115489840 10 - TSS region transcription start site region 52811
Tssr52812 5 115489943 to 115489953 10 - TSS region transcription start site region 52812
Tssr52813 5 115489955 to 115489981 26 - TSS region transcription start site region 52813
Tssr52814 5 115489991 to 115490036 45 - TSS region transcription start site region 52814
Tssr52815 5 115490185 to 115490204 19 - TSS region transcription start site region 52815
Tssr48295 5 115490231 to 115490251 20 + TSS region transcription start site region 48295
Gm24407 5 115490254 to 115490394 140 + snRNA gene predicted gene, 24407
Tssr48296 5 115490326 to 115490329 3 + TSS region transcription start site region 48296
Tssr52816 5 115490344 to 115490378 34 - TSS region transcription start site region 52816
Cpgi16376 5 115491791 to 115492398 607 CpG island CpG island 16376
Tssr52817 5 115491886 to 115491902 16 - TSS region transcription start site region 52817
Gm13836 5 115491955 to 115492455 500 - pseudogene predicted gene 13836
Tssr48297 5 115491970 to 115491988 18 + TSS region transcription start site region 48297
Tssr48298 5 115492365 to 115492381 16 + TSS region transcription start site region 48298
Tssr48299 5 115499748 to 115499751 3 + TSS region transcription start site region 48299
Tssr52818 5 115500462 to 115500495 33 - TSS region transcription start site region 52818
Tssr48300 5 115500642 to 115500649 7 + TSS region transcription start site region 48300
Tssr1611 5 115500667 to 115500676 9 + TSS region transcription start site region 1611
Cpgi16377 5 115506365 to 115507438 1073 CpG island CpG island 16377
Tssr48301 5 115506668 to 115506753 85 + TSS region transcription start site region 48301
Pxn 5 115506676 to 115555987 49311 + protein coding gene paxillin
Gm13840 5 115515263 to 115515947 684 + sense intronic lncRNA gene predicted gene 13840
Cpgi16378 5 115516178 to 115516500 322 CpG island CpG island 16378
Tssr48302 5 115519659 to 115519679 20 + TSS region transcription start site region 48302
Tssr48303 5 115519684 to 115519746 62 + TSS region transcription start site region 48303
Cpgi16379 5 115520351 to 115520578 227 CpG island CpG island 16379
Tssr52819 5 115520641 to 115520646 5 - TSS region transcription start site region 52819