Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115191770-115322895

43 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Cabp1	5	115168691 to 115194381	25690	-	protein coding gene	calcium binding protein 1
Cpgi16357	5	115192404 to 115192617	213		CpG island	CpG island 16357
Cpgi16358	5	115193246 to 115194904	1658		CpG island	CpG island 16358
Tssr52766	5	115194182 to 115194200	18	-	TSS region	transcription start site region 52766
Tssr52767	5	115194214 to 115194225	11	-	TSS region	transcription start site region 52767
Tssr52768	5	115194245 to 115194257	12	-	TSS region	transcription start site region 52768
Tssr52769	5	115194258 to 115194274	16	-	TSS region	transcription start site region 52769
Tssr52770	5	115194283 to 115194327	44	-	TSS region	transcription start site region 52770
Gm35515	5	115194378 to 115205256	10878	+	lncRNA gene	predicted gene, 35515
Gm13828	5	115198343 to 115198705	362	+	pseudogene	predicted gene 13828
Tssr48206	5	115203988 to 115203997	9	+	TSS region	transcription start site region 48206
Cpgi16359	5	115204707 to 115205077	370		CpG island	CpG island 16359
Cpgi16360	5	115235175 to 115236050	875		CpG island	CpG island 16360
Tssr48207	5	115235496 to 115235511	15	+	TSS region	transcription start site region 48207
Tssr48208	5	115235522 to 115235533	11	+	TSS region	transcription start site region 48208
Pop5	5	115235589 to 115240972	5383	+	protein coding gene	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
Cpgi16361	5	115237585 to 115238590	1005		CpG island	CpG island 16361
Tssr48209	5	115238008 to 115238083	75	+	TSS region	transcription start site region 48209
Rnf10	5	115241770 to 115272895	31125	-	protein coding gene	ring finger protein 10
Gm13831	5	115263093 to 115263394	301	+	pseudogene	predicted gene 13831
Tssr52771	5	115267178 to 115267181	3	-	TSS region	transcription start site region 52771
D5Mit318	5	115271579 to 115271655	76		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 318
Cpgi16362	5	115272006 to 115273041	1035		CpG island	CpG island 16362
Tssr52772	5	115272381 to 115272441	60	-	TSS region	transcription start site region 52772
Tssr52773	5	115272485 to 115272524	39	-	TSS region	transcription start site region 52773
Tssr52774	5	115272883 to 115272903	20	-	TSS region	transcription start site region 52774
Cpgi16363	5	115279382 to 115280378	996		CpG island	CpG island 16363
Coq5	5	115279666 to 115296972	17306	+	protein coding gene	coenzyme Q5 methyltransferase
Tssr48210	5	115279673 to 115279716	43	+	TSS region	transcription start site region 48210
Tssr48211	5	115279728 to 115279739	11	+	TSS region	transcription start site region 48211
Gm13829	5	115291763 to 115291900	137	-	pseudogene	predicted gene 13829
Dynll1	5	115297110 to 115300990	3880	-	protein coding gene	dynein light chain LC8-type 1
Tssr52775	5	115298774 to 115298793	19	-	TSS region	transcription start site region 52775
Cpgi16364	5	115300245 to 115301621	1376		CpG island	CpG island 16364
Tssr52776	5	115300551 to 115300564	13	-	TSS region	transcription start site region 52776
Tssr52777	5	115300927 to 115300944	17	-	TSS region	transcription start site region 52777
Tssr52778	5	115300957 to 115300968	11	-	TSS region	transcription start site region 52778
Tssr48212	5	115301111 to 115301174	63	+	TSS region	transcription start site region 48212
Gm13830	5	115301120 to 115319208	18088	+	lincRNA gene	predicted gene 13830
Tssr52779	5	115312898 to 115312899	1	-	TSS region	transcription start site region 52779
Tssr48213	5	115312994 to 115313025	31	+	TSS region	transcription start site region 48213
Tssr52780	5	115313760 to 115313772	12	-	TSS region	transcription start site region 52780
Cpgi16365	5	115319520 to 115319888	368		CpG island	CpG island 16365