Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:115118691-115244381

44 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Acads	5	115110299 to 115119346	9047	-	protein coding gene	acyl-Coenzyme A dehydrogenase, short chain
Cpgi16350	5	115118976 to 115119504	528		CpG island	CpG island 16350
Tssr52753	5	115119277 to 115119345	68	-	TSS region	transcription start site region 52753
Unc119b	5	115122566 to 115134975	12409	-	protein coding gene	unc-119 lipid binding chaperone B
Cpgi16351	5	115125194 to 115125501	307		CpG island	CpG island 16351
Tssr52754	5	115127517 to 115127530	13	-	TSS region	transcription start site region 52754
Cpgi16352	5	115134237 to 115135091	854		CpG island	CpG island 16352
Tssr52755	5	115134907 to 115134968	61	-	TSS region	transcription start site region 52755
Mlec	5	115142981 to 115158176	15195	-	protein coding gene	malectin
Tssr48205	5	115147702 to 115147723	21	+	TSS region	transcription start site region 48205
Tssr52756	5	115147841 to 115147887	46	-	TSS region	transcription start site region 52756
Tssr52757	5	115148006 to 115148039	33	-	TSS region	transcription start site region 52757
Tssr52758	5	115148055 to 115148074	19	-	TSS region	transcription start site region 52758
Tssr52759	5	115152370 to 115152381	11	-	TSS region	transcription start site region 52759
Tssr52760	5	115155175 to 115155203	28	-	TSS region	transcription start site region 52760
Tssr52761	5	115156927 to 115156932	5	-	TSS region	transcription start site region 52761
Cpgi16353	5	115157126 to 115159013	1887		CpG island	CpG island 16353
Tssr52762	5	115158135 to 115158159	24	-	TSS region	transcription start site region 52762
Tssr52763	5	115158169 to 115158180	11	-	TSS region	transcription start site region 52763
Tssr52764	5	115158336 to 115158347	11	-	TSS region	transcription start site region 52764
Tssr52765	5	115158365 to 115158390	25	-	TSS region	transcription start site region 52765
Gm35465	5	115159499 to 115165455	5956	+	lncRNA gene	predicted gene, 35465
Cabp1	5	115168691 to 115194381	25690	-	protein coding gene	calcium binding protein 1
Cpgi16354	5	115172695 to 115172970	275		CpG island	CpG island 16354
Cpgi16355	5	115180688 to 115181157	469		CpG island	CpG island 16355
Cpgi16356	5	115186896 to 115187067	171		CpG island	CpG island 16356
Cpgi16357	5	115192404 to 115192617	213		CpG island	CpG island 16357
Cpgi16358	5	115193246 to 115194904	1658		CpG island	CpG island 16358
Tssr52766	5	115194182 to 115194200	18	-	TSS region	transcription start site region 52766
Tssr52767	5	115194214 to 115194225	11	-	TSS region	transcription start site region 52767
Tssr52768	5	115194245 to 115194257	12	-	TSS region	transcription start site region 52768
Tssr52769	5	115194258 to 115194274	16	-	TSS region	transcription start site region 52769
Tssr52770	5	115194283 to 115194327	44	-	TSS region	transcription start site region 52770
Gm35515	5	115194378 to 115205256	10878	+	lncRNA gene	predicted gene, 35515
Gm13828	5	115198343 to 115198705	362	+	pseudogene	predicted gene 13828
Tssr48206	5	115203988 to 115203997	9	+	TSS region	transcription start site region 48206
Cpgi16359	5	115204707 to 115205077	370		CpG island	CpG island 16359
Cpgi16360	5	115235175 to 115236050	875		CpG island	CpG island 16360
Tssr48207	5	115235496 to 115235511	15	+	TSS region	transcription start site region 48207
Tssr48208	5	115235522 to 115235533	11	+	TSS region	transcription start site region 48208
Pop5	5	115235589 to 115240972	5383	+	protein coding gene	processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
Cpgi16361	5	115237585 to 115238590	1005		CpG island	CpG island 16361
Tssr48209	5	115238008 to 115238083	75	+	TSS region	transcription start site region 48209
Rnf10	5	115241770 to 115272895	31125	-	protein coding gene	ring finger protein 10