Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114971524-115138790

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hnf1aos1 5 114968784 to 114998042 29258 + antisense lncRNA gene HNF1 homeobox A, opposite strand 1
Tssr52751 5 114973316 to 114973335 19 - TSS region transcription start site region 52751
1810017P11Rik 5 114975456 to 114976013 557 + unclassified gene RIKEN cDNA 1810017P11 gene
Cpgi16346 5 114979250 to 114979420 170 CpG island CpG island 16346
Tssr48198 5 114989663 to 114989683 20 + TSS region transcription start site region 48198
Cpgi16347 5 114996587 to 114996786 199 CpG island CpG island 16347
Cpgi16348 5 115004291 to 115004701 410 CpG island CpG island 16348
Cpgi16349 5 115010619 to 115012501 1882 CpG island CpG island 16349
Tssr48199 5 115011111 to 115011208 97 + TSS region transcription start site region 48199
Tssr48200 5 115011322 to 115011335 13 + TSS region transcription start site region 48200
Tssr48201 5 115011347 to 115011403 56 + TSS region transcription start site region 48201
Sppl3 5 115011524 to 115098790 87266 + protein coding gene signal peptide peptidase 3
Tssr48202 5 115025528 to 115025533 5 + TSS region transcription start site region 48202
C730045M19Rik 5 115039770 to 115041084 1314 + unclassified gene RIKEN cDNA C730045M19 gene
Tssr48203 5 115053461 to 115053468 7 + TSS region transcription start site region 48203
Gm13827 5 115053469 to 115053840 371 - pseudogene predicted gene 13827
Tssr48204 5 115082260 to 115082278 18 + TSS region transcription start site region 48204
Gm10401 5 115097689 to 115098295 606 - unclassified gene predicted gene 10401
Rpl37rt 5 115102923 to 115110268 7345 - protein coding gene ribosomal protein L37, retrotransposed
Tssr52752 5 115103540 to 115103560 20 - TSS region transcription start site region 52752
Acads 5 115110299 to 115119346 9047 - protein coding gene acyl-Coenzyme A dehydrogenase, short chain
Cpgi16350 5 115118976 to 115119504 528 CpG island CpG island 16350
Tssr52753 5 115119277 to 115119345 68 - TSS region transcription start site region 52753
Unc119b 5 115122566 to 115134975 12409 - protein coding gene unc-119 lipid binding chaperone B
Cpgi16351 5 115125194 to 115125501 307 CpG island CpG island 16351
Tssr52754 5 115127517 to 115127530 13 - TSS region transcription start site region 52754
Cpgi16352 5 115134237 to 115135091 854 CpG island CpG island 16352
Tssr52755 5 115134907 to 115134968 61 - TSS region transcription start site region 52755