Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114967517-115287530

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hnf1a 5 114948980 to 114971062 22082 - protein coding gene HNF1 homeobox A
Tssr48194 5 114968759 to 114968773 14 + TSS region transcription start site region 48194
Hnf1aos1 5 114968784 to 114998042 29258 + antisense lncRNA gene HNF1 homeobox A, opposite strand 1
Tssr48195 5 114968789 to 114968808 19 + TSS region transcription start site region 48195
Hnf1aos2 5 114968823 to 114971400 2577 + antisense lncRNA gene HNF1 homeobox A, opposite strand 2
Tssr48196 5 114968828 to 114968835 7 + TSS region transcription start site region 48196
Tssr48197 5 114969870 to 114969885 15 + TSS region transcription start site region 48197
Cpgi16345 5 114970593 to 114970964 371 CpG island CpG island 16345
Tssr52748 5 114970873 to 114970887 14 - TSS region transcription start site region 52748
Tssr52749 5 114971056 to 114971079 23 - TSS region transcription start site region 52749
Tssr52750 5 114971117 to 114971128 11 - TSS region transcription start site region 52750
Tssr52751 5 114973316 to 114973335 19 - TSS region transcription start site region 52751
1810017P11Rik 5 114975456 to 114976013 557 + unclassified gene RIKEN cDNA 1810017P11 gene
Cpgi16346 5 114979250 to 114979420 170 CpG island CpG island 16346
Tssr48198 5 114989663 to 114989683 20 + TSS region transcription start site region 48198
Cpgi16347 5 114996587 to 114996786 199 CpG island CpG island 16347
Cpgi16348 5 115004291 to 115004701 410 CpG island CpG island 16348
Cpgi16349 5 115010619 to 115012501 1882 CpG island CpG island 16349
Tssr48199 5 115011111 to 115011208 97 + TSS region transcription start site region 48199
Tssr48200 5 115011322 to 115011335 13 + TSS region transcription start site region 48200
Tssr48201 5 115011347 to 115011403 56 + TSS region transcription start site region 48201
Sppl3 5 115011524 to 115098790 87266 + protein coding gene signal peptide peptidase 3
Tssr48202 5 115025528 to 115025533 5 + TSS region transcription start site region 48202
C730045M19Rik 5 115039770 to 115041084 1314 + unclassified gene RIKEN cDNA C730045M19 gene
Tssr48203 5 115053461 to 115053468 7 + TSS region transcription start site region 48203
Gm13827 5 115053469 to 115053840 371 - pseudogene predicted gene 13827
Tssr48204 5 115082260 to 115082278 18 + TSS region transcription start site region 48204
Gm10401 5 115097689 to 115098295 606 - unclassified gene predicted gene 10401
Rpl37rt 5 115102923 to 115110268 7345 - protein coding gene ribosomal protein L37, retrotransposed
Tssr52752 5 115103540 to 115103560 20 - TSS region transcription start site region 52752
Acads 5 115110299 to 115119346 9047 - protein coding gene acyl-Coenzyme A dehydrogenase, short chain
Cpgi16350 5 115118976 to 115119504 528 CpG island CpG island 16350
Tssr52753 5 115119277 to 115119345 68 - TSS region transcription start site region 52753
Unc119b 5 115122566 to 115134975 12409 - protein coding gene unc-119 lipid binding chaperone B
Cpgi16351 5 115125194 to 115125501 307 CpG island CpG island 16351
Tssr52754 5 115127517 to 115127530 13 - TSS region transcription start site region 52754
Cpgi16352 5 115134237 to 115135091 854 CpG island CpG island 16352
Tssr52755 5 115134907 to 115134968 61 - TSS region transcription start site region 52755
Mlec 5 115142981 to 115158176 15195 - protein coding gene malectin
Tssr48205 5 115147702 to 115147723 21 + TSS region transcription start site region 48205
Tssr52756 5 115147841 to 115147887 46 - TSS region transcription start site region 52756
Tssr52757 5 115148006 to 115148039 33 - TSS region transcription start site region 52757
Tssr52758 5 115148055 to 115148074 19 - TSS region transcription start site region 52758
Tssr52759 5 115152370 to 115152381 11 - TSS region transcription start site region 52759
Tssr52760 5 115155175 to 115155203 28 - TSS region transcription start site region 52760
Tssr52761 5 115156927 to 115156932 5 - TSS region transcription start site region 52761
Cpgi16353 5 115157126 to 115159013 1887 CpG island CpG island 16353
Tssr52762 5 115158135 to 115158159 24 - TSS region transcription start site region 52762
Tssr52763 5 115158169 to 115158180 11 - TSS region transcription start site region 52763
Tssr52764 5 115158336 to 115158347 11 - TSS region transcription start site region 52764
Tssr52765 5 115158365 to 115158390 25 - TSS region transcription start site region 52765
Gm35465 5 115159499 to 115165455 5956 + lncRNA gene predicted gene, 35465
Cabp1 5 115168691 to 115194381 25690 - protein coding gene calcium binding protein 1
Cpgi16354 5 115172695 to 115172970 275 CpG island CpG island 16354
Cpgi16355 5 115180688 to 115181157 469 CpG island CpG island 16355
Cpgi16356 5 115186896 to 115187067 171 CpG island CpG island 16356
Cpgi16357 5 115192404 to 115192617 213 CpG island CpG island 16357
Cpgi16358 5 115193246 to 115194904 1658 CpG island CpG island 16358
Tssr52766 5 115194182 to 115194200 18 - TSS region transcription start site region 52766
Tssr52767 5 115194214 to 115194225 11 - TSS region transcription start site region 52767
Tssr52768 5 115194245 to 115194257 12 - TSS region transcription start site region 52768
Tssr52769 5 115194258 to 115194274 16 - TSS region transcription start site region 52769
Tssr52770 5 115194283 to 115194327 44 - TSS region transcription start site region 52770
Gm35515 5 115194378 to 115205256 10878 + lncRNA gene predicted gene, 35515
Gm13828 5 115198343 to 115198705 362 + pseudogene predicted gene 13828
Tssr48206 5 115203988 to 115203997 9 + TSS region transcription start site region 48206
Cpgi16359 5 115204707 to 115205077 370 CpG island CpG island 16359
Cpgi16360 5 115235175 to 115236050 875 CpG island CpG island 16360
Tssr48207 5 115235496 to 115235511 15 + TSS region transcription start site region 48207
Tssr48208 5 115235522 to 115235533 11 + TSS region transcription start site region 48208
Pop5 5 115235589 to 115240972 5383 + protein coding gene processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
Cpgi16361 5 115237585 to 115238590 1005 CpG island CpG island 16361
Tssr48209 5 115238008 to 115238083 75 + TSS region transcription start site region 48209
Rnf10 5 115241770 to 115272895 31125 - protein coding gene ring finger protein 10
Gm13831 5 115263093 to 115263394 301 + pseudogene predicted gene 13831
Tssr52771 5 115267178 to 115267181 3 - TSS region transcription start site region 52771
D5Mit318 5 115271579 to 115271655 76 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 318
Cpgi16362 5 115272006 to 115273041 1035 CpG island CpG island 16362
Tssr52772 5 115272381 to 115272441 60 - TSS region transcription start site region 52772
Tssr52773 5 115272485 to 115272524 39 - TSS region transcription start site region 52773
Tssr52774 5 115272883 to 115272903 20 - TSS region transcription start site region 52774
Cpgi16363 5 115279382 to 115280378 996 CpG island CpG island 16363
Coq5 5 115279666 to 115296972 17306 + protein coding gene coenzyme Q5 methyltransferase
Tssr48210 5 115279673 to 115279716 43 + TSS region transcription start site region 48210
Tssr48211 5 115279728 to 115279739 11 + TSS region transcription start site region 48211