Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114944378-115455256

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194 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Diht 5 104350872 to 114963481 10612609 QTL dopamine-induced hypothermia
2210016L21Rik 5 114942163 to 114948540 6377 + protein coding gene RIKEN cDNA 2210016L21 gene
Hnf1a 5 114948980 to 114971062 22082 - protein coding gene HNF1 homeobox A
Tssr52745 5 114950822 to 114950853 31 - TSS region transcription start site region 52745
Cpgi16343 5 114952469 to 114952711 242 CpG island CpG island 16343
Tssr52746 5 114952718 to 114952721 3 - TSS region transcription start site region 52746
Tssr52747 5 114952750 to 114952763 13 - TSS region transcription start site region 52747
Cpgi16344 5 114955315 to 114955506 191 CpG island CpG island 16344
D5Mit158 5 114963169 to 114963481 312 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 158
Tssr48194 5 114968759 to 114968773 14 + TSS region transcription start site region 48194
Hnf1aos1 5 114968784 to 114998042 29258 + antisense lncRNA gene HNF1 homeobox A, opposite strand 1
Tssr48195 5 114968789 to 114968808 19 + TSS region transcription start site region 48195
Hnf1aos2 5 114968823 to 114971400 2577 + antisense lncRNA gene HNF1 homeobox A, opposite strand 2
Tssr48196 5 114968828 to 114968835 7 + TSS region transcription start site region 48196
Tssr48197 5 114969870 to 114969885 15 + TSS region transcription start site region 48197
Cpgi16345 5 114970593 to 114970964 371 CpG island CpG island 16345
Tssr52748 5 114970873 to 114970887 14 - TSS region transcription start site region 52748
Tssr52749 5 114971056 to 114971079 23 - TSS region transcription start site region 52749
Tssr52750 5 114971117 to 114971128 11 - TSS region transcription start site region 52750
Tssr52751 5 114973316 to 114973335 19 - TSS region transcription start site region 52751
1810017P11Rik 5 114975456 to 114976013 557 + unclassified gene RIKEN cDNA 1810017P11 gene
Cpgi16346 5 114979250 to 114979420 170 CpG island CpG island 16346
Tssr48198 5 114989663 to 114989683 20 + TSS region transcription start site region 48198
Cpgi16347 5 114996587 to 114996786 199 CpG island CpG island 16347
Cpgi16348 5 115004291 to 115004701 410 CpG island CpG island 16348
Cpgi16349 5 115010619 to 115012501 1882 CpG island CpG island 16349
Tssr48199 5 115011111 to 115011208 97 + TSS region transcription start site region 48199
Tssr48200 5 115011322 to 115011335 13 + TSS region transcription start site region 48200
Tssr48201 5 115011347 to 115011403 56 + TSS region transcription start site region 48201
Sppl3 5 115011524 to 115098790 87266 + protein coding gene signal peptide peptidase 3
Tssr48202 5 115025528 to 115025533 5 + TSS region transcription start site region 48202
C730045M19Rik 5 115039770 to 115041084 1314 + unclassified gene RIKEN cDNA C730045M19 gene
Tssr48203 5 115053461 to 115053468 7 + TSS region transcription start site region 48203
Gm13827 5 115053469 to 115053840 371 - pseudogene predicted gene 13827
Tssr48204 5 115082260 to 115082278 18 + TSS region transcription start site region 48204
Gm10401 5 115097689 to 115098295 606 - unclassified gene predicted gene 10401
Rpl37rt 5 115102923 to 115110268 7345 - protein coding gene ribosomal protein L37, retrotransposed
Tssr52752 5 115103540 to 115103560 20 - TSS region transcription start site region 52752
Acads 5 115110299 to 115119346 9047 - protein coding gene acyl-Coenzyme A dehydrogenase, short chain
Cpgi16350 5 115118976 to 115119504 528 CpG island CpG island 16350
Tssr52753 5 115119277 to 115119345 68 - TSS region transcription start site region 52753
Unc119b 5 115122566 to 115134975 12409 - protein coding gene unc-119 lipid binding chaperone B
Cpgi16351 5 115125194 to 115125501 307 CpG island CpG island 16351
Tssr52754 5 115127517 to 115127530 13 - TSS region transcription start site region 52754
Cpgi16352 5 115134237 to 115135091 854 CpG island CpG island 16352
Tssr52755 5 115134907 to 115134968 61 - TSS region transcription start site region 52755
Mlec 5 115142981 to 115158176 15195 - protein coding gene malectin
Tssr48205 5 115147702 to 115147723 21 + TSS region transcription start site region 48205
Tssr52756 5 115147841 to 115147887 46 - TSS region transcription start site region 52756
Tssr52757 5 115148006 to 115148039 33 - TSS region transcription start site region 52757
Tssr52758 5 115148055 to 115148074 19 - TSS region transcription start site region 52758
Tssr52759 5 115152370 to 115152381 11 - TSS region transcription start site region 52759
Tssr52760 5 115155175 to 115155203 28 - TSS region transcription start site region 52760
Tssr52761 5 115156927 to 115156932 5 - TSS region transcription start site region 52761
Cpgi16353 5 115157126 to 115159013 1887 CpG island CpG island 16353
Tssr52762 5 115158135 to 115158159 24 - TSS region transcription start site region 52762
Tssr52763 5 115158169 to 115158180 11 - TSS region transcription start site region 52763
Tssr52764 5 115158336 to 115158347 11 - TSS region transcription start site region 52764
Tssr52765 5 115158365 to 115158390 25 - TSS region transcription start site region 52765
Gm35465 5 115159499 to 115165455 5956 + lncRNA gene predicted gene, 35465
Cabp1 5 115168691 to 115194381 25690 - protein coding gene calcium binding protein 1
Cpgi16354 5 115172695 to 115172970 275 CpG island CpG island 16354
Cpgi16355 5 115180688 to 115181157 469 CpG island CpG island 16355
Cpgi16356 5 115186896 to 115187067 171 CpG island CpG island 16356
Cpgi16357 5 115192404 to 115192617 213 CpG island CpG island 16357
Cpgi16358 5 115193246 to 115194904 1658 CpG island CpG island 16358
Tssr52766 5 115194182 to 115194200 18 - TSS region transcription start site region 52766
Tssr52767 5 115194214 to 115194225 11 - TSS region transcription start site region 52767
Tssr52768 5 115194245 to 115194257 12 - TSS region transcription start site region 52768
Tssr52769 5 115194258 to 115194274 16 - TSS region transcription start site region 52769
Tssr52770 5 115194283 to 115194327 44 - TSS region transcription start site region 52770
Gm35515 5 115194378 to 115205256 10878 + lncRNA gene predicted gene, 35515
Gm13828 5 115198343 to 115198705 362 + pseudogene predicted gene 13828
Tssr48206 5 115203988 to 115203997 9 + TSS region transcription start site region 48206
Cpgi16359 5 115204707 to 115205077 370 CpG island CpG island 16359
Cpgi16360 5 115235175 to 115236050 875 CpG island CpG island 16360
Tssr48207 5 115235496 to 115235511 15 + TSS region transcription start site region 48207
Tssr48208 5 115235522 to 115235533 11 + TSS region transcription start site region 48208
Pop5 5 115235589 to 115240972 5383 + protein coding gene processing of precursor 5, ribonuclease P/MRP family (S. cerevisiae)
Cpgi16361 5 115237585 to 115238590 1005 CpG island CpG island 16361
Tssr48209 5 115238008 to 115238083 75 + TSS region transcription start site region 48209
Rnf10 5 115241770 to 115272895 31125 - protein coding gene ring finger protein 10
Gm13831 5 115263093 to 115263394 301 + pseudogene predicted gene 13831
Tssr52771 5 115267178 to 115267181 3 - TSS region transcription start site region 52771
D5Mit318 5 115271579 to 115271655 76 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 318
Cpgi16362 5 115272006 to 115273041 1035 CpG island CpG island 16362
Tssr52772 5 115272381 to 115272441 60 - TSS region transcription start site region 52772
Tssr52773 5 115272485 to 115272524 39 - TSS region transcription start site region 52773
Tssr52774 5 115272883 to 115272903 20 - TSS region transcription start site region 52774
Cpgi16363 5 115279382 to 115280378 996 CpG island CpG island 16363
Coq5 5 115279666 to 115296972 17306 + protein coding gene coenzyme Q5 methyltransferase
Tssr48210 5 115279673 to 115279716 43 + TSS region transcription start site region 48210
Tssr48211 5 115279728 to 115279739 11 + TSS region transcription start site region 48211
Gm13829 5 115291763 to 115291900 137 - pseudogene predicted gene 13829
Dynll1 5 115297110 to 115300990 3880 - protein coding gene dynein light chain LC8-type 1
Tssr52775 5 115298774 to 115298793 19 - TSS region transcription start site region 52775
Cpgi16364 5 115300245 to 115301621 1376 CpG island CpG island 16364
Tssr52776 5 115300551 to 115300564 13 - TSS region transcription start site region 52776
Tssr52777 5 115300927 to 115300944 17 - TSS region transcription start site region 52777
Tssr52778 5 115300957 to 115300968 11 - TSS region transcription start site region 52778
Tssr48212 5 115301111 to 115301174 63 + TSS region transcription start site region 48212
Gm13830 5 115301120 to 115319208 18088 + lincRNA gene predicted gene 13830
Tssr52779 5 115312898 to 115312899 1 - TSS region transcription start site region 52779
Tssr48213 5 115312994 to 115313025 31 + TSS region transcription start site region 48213
Tssr52780 5 115313760 to 115313772 12 - TSS region transcription start site region 52780
Cpgi16365 5 115319520 to 115319888 368 CpG island CpG island 16365
Cpgi16366 5 115326644 to 115328277 1633 CpG island CpG island 16366
Tssr52781 5 115326967 to 115326981 14 - TSS region transcription start site region 52781
Tssr52782 5 115326984 to 115327016 32 - TSS region transcription start site region 52782
Tssr48214 5 115327059 to 115327070 11 + TSS region transcription start site region 48214
Tssr48215 5 115327125 to 115327199 74 + TSS region transcription start site region 48215
Srsf9 5 115327177 to 115333080 5903 + protein coding gene serine/arginine-rich splicing factor 9
Tssr48216 5 115327201 to 115327267 66 + TSS region transcription start site region 48216
Tssr48217 5 115327274 to 115327283 9 + TSS region transcription start site region 48217
Tssr48218 5 115327644 to 115327677 33 + TSS region transcription start site region 48218
Tssr48219 5 115327723 to 115327734 11 + TSS region transcription start site region 48219
Tssr48220 5 115332721 to 115332793 72 + TSS region transcription start site region 48220
Tssr48221 5 115332858 to 115332872 14 + TSS region transcription start site region 48221
Gatc 5 115333242 to 115341161 7919 - protein coding gene glutamyl-tRNA(Gln) amidotransferase, subunit C
Tssr52783 5 115334029 to 115334064 35 - TSS region transcription start site region 52783
Tssr52784 5 115334068 to 115334095 27 - TSS region transcription start site region 52784
Tssr52785 5 115334098 to 115334169 71 - TSS region transcription start site region 52785
Tssr52786 5 115334224 to 115334240 16 - TSS region transcription start site region 52786
Tssr52787 5 115334269 to 115334280 11 - TSS region transcription start site region 52787
Tssr52788 5 115334479 to 115334498 19 - TSS region transcription start site region 52788
Tssr52789 5 115334516 to 115334531 15 - TSS region transcription start site region 52789
Cpgi16367 5 115340735 to 115341659 924 CpG island CpG island 16367
Tssr52790 5 115341112 to 115341139 27 - TSS region transcription start site region 52790
Tssr52791 5 115341142 to 115341191 49 - TSS region transcription start site region 52791
Tssr52792 5 115341195 to 115341211 16 - TSS region transcription start site region 52792
Tssr48222 5 115341225 to 115341270 45 + TSS region transcription start site region 48222
Triap1 5 115341247 to 115343552 2305 + protein coding gene TP53 regulated inhibitor of apoptosis 1
Tssr48223 5 115341288 to 115341297 9 + TSS region transcription start site region 48223
Tssr48224 5 115341315 to 115341324 9 + TSS region transcription start site region 48224
Cox6a1 5 115345654 to 115348955 3301 - protein coding gene cytochrome c oxidase subunit 6A1
Tssr48225 5 115345826 to 115345856 30 + TSS region transcription start site region 48225
Cpgi16368 5 115348222 to 115349468 1246 CpG island CpG island 16368
Tssr52793 5 115348596 to 115348628 32 - TSS region transcription start site region 52793
Tssr52794 5 115348652 to 115348663 11 - TSS region transcription start site region 52794
Tssr52795 5 115348712 to 115348738 26 - TSS region transcription start site region 52795
Tssr52796 5 115348953 to 115348959 6 - TSS region transcription start site region 52796
Gm42903 5 115349130 to 115353155 4025 + lincRNA gene predicted gene 42903
4930401G09Rik 5 115358700 to 115360123 1423 - lincRNA gene RIKEN cDNA 4930401G09 gene
Gm13832 5 115359078 to 115422863 63785 + lincRNA gene predicted gene 13832
Cpgi16369 5 115398263 to 115398928 665 CpG island CpG island 16369
Tssr48226 5 115404165 to 115404169 4 + TSS region transcription start site region 48226
Tssr48227 5 115404537 to 115404580 43 + TSS region transcription start site region 48227
A930005G22Rik 5 115420597 to 115422500 1903 - lncRNA gene RIKEN cDNA A930005G22 gene
Gm43231 5 115427218 to 115429475 2257 - unclassified gene predicted gene 43231
Cpgi16370 5 115429020 to 115430962 1942 CpG island CpG island 16370
Tssr52797 5 115429495 to 115429509 14 - TSS region transcription start site region 52797
Tssr48228 5 115429505 to 115429517 12 + TSS region transcription start site region 48228
Tssr48229 5 115429522 to 115429535 13 + TSS region transcription start site region 48229
Tssr48230 5 115429549 to 115429568 19 + TSS region transcription start site region 48230
Tssr48231 5 115429585 to 115429613 28 + TSS region transcription start site region 48231
Msi1 5 115429599 to 115455698 26099 + protein coding gene musashi RNA-binding protein 1
Tssr48232 5 115429622 to 115429683 61 + TSS region transcription start site region 48232
Tssr48233 5 115429696 to 115429707 11 + TSS region transcription start site region 48233
Tssr48234 5 115429720 to 115429734 14 + TSS region transcription start site region 48234
Tssr48235 5 115429759 to 115429770 11 + TSS region transcription start site region 48235
Tssr48236 5 115429944 to 115429992 48 + TSS region transcription start site region 48236
Tssr48237 5 115430317 to 115430336 19 + TSS region transcription start site region 48237
Tssr48238 5 115430580 to 115430629 49 + TSS region transcription start site region 48238
Tssr48239 5 115431359 to 115431382 23 + TSS region transcription start site region 48239
Tssr48240 5 115432007 to 115432018 11 + TSS region transcription start site region 48240
Tssr48241 5 115432020 to 115432040 20 + TSS region transcription start site region 48241
Tssr48242 5 115434974 to 115434986 12 + TSS region transcription start site region 48242
Tssr48243 5 115435000 to 115435029 29 + TSS region transcription start site region 48243
Tssr48244 5 115435040 to 115435064 24 + TSS region transcription start site region 48244
Tssr48245 5 115435076 to 115435089 13 + TSS region transcription start site region 48245
Tssr48246 5 115435094 to 115435105 11 + TSS region transcription start site region 48246
Tssr48247 5 115435127 to 115435144 17 + TSS region transcription start site region 48247
Tssr48248 5 115435245 to 115435256 11 + TSS region transcription start site region 48248
Tssr48249 5 115435416 to 115435435 19 + TSS region transcription start site region 48249
Tssr48250 5 115435445 to 115435452 7 + TSS region transcription start site region 48250
Tssr48251 5 115435482 to 115435498 16 + TSS region transcription start site region 48251
Tssr48252 5 115435518 to 115435521 3 + TSS region transcription start site region 48252
4930430O22Rik 5 115436066 to 115436644 578 - antisense lncRNA gene RIKEN cDNA 4930430O22 gene
Cpgi16371 5 115436395 to 115437131 736 CpG island CpG island 16371
Tssr52798 5 115436508 to 115436531 23 - TSS region transcription start site region 52798
Tssr48253 5 115436622 to 115436633 11 + TSS region transcription start site region 48253
Tssr48254 5 115436641 to 115436657 16 + TSS region transcription start site region 48254
Tssr48255 5 115436965 to 115436978 13 + TSS region transcription start site region 48255
Tssr48256 5 115438189 to 115438239 50 + TSS region transcription start site region 48256
Tssr48257 5 115443175 to 115443188 13 + TSS region transcription start site region 48257
Tssr48258 5 115448884 to 115448890 6 + TSS region transcription start site region 48258
Tssr48259 5 115450907 to 115450923 16 + TSS region transcription start site region 48259
Tssr48260 5 115453866 to 115453884 18 + TSS region transcription start site region 48260
Tssr48261 5 115453942 to 115453975 33 + TSS region transcription start site region 48261
Tssr48262 5 115454049 to 115454075 26 + TSS region transcription start site region 48262
Tssr48263 5 115454177 to 115454188 11 + TSS region transcription start site region 48263
Tssr48264 5 115454268 to 115454280 12 + TSS region transcription start site region 48264
Tssr48265 5 115454485 to 115454506 21 + TSS region transcription start site region 48265
Tssr48266 5 115454555 to 115454583 28 + TSS region transcription start site region 48266