Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114724375-114855821

42 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Git2	5	114727408 to 114773522	46114	-	protein coding gene	GIT ArfGAP 2
Tssr52724	5	114730354 to 114730378	24	-	TSS region	transcription start site region 52724
Tssr52725	5	114733286 to 114733314	28	-	TSS region	transcription start site region 52725
Tssr52726	5	114744831 to 114744832	1	-	TSS region	transcription start site region 52726
Tssr52727	5	114761945 to 114761975	30	-	TSS region	transcription start site region 52727
Cpgi16334	5	114772625 to 114773690	1065		CpG island	CpG island 16334
Tssr52728	5	114772650 to 114772665	15	-	TSS region	transcription start site region 52728
Tssr48097	5	114772895 to 114772897	2	+	TSS region	transcription start site region 48097
Tssr52729	5	114773357 to 114773370	13	-	TSS region	transcription start site region 52729
Tssr52730	5	114773372 to 114773472	100	-	TSS region	transcription start site region 52730
Tssr52731	5	114773488 to 114773517	29	-	TSS region	transcription start site region 52731
4930515G01Rik	5	114773737 to 114774983	1246	-	antisense lncRNA gene	RIKEN cDNA 4930515G01 gene
Cpgi16335	5	114774294 to 114775757	1463		CpG island	CpG island 16335
Ankrd13a	5	114774923 to 114805821	30898	+	protein coding gene	ankyrin repeat domain 13a
Tssr48098	5	114774939 to 114774957	18	+	TSS region	transcription start site region 48098
Tssr48099	5	114775942 to 114775952	10	+	TSS region	transcription start site region 48099
Tssr1606	5	114777721 to 114777741	20	+	TSS region	transcription start site region 1606
Tssr48100	5	114785747 to 114785761	14	+	TSS region	transcription start site region 48100
Tssr48101	5	114785781 to 114785791	10	+	TSS region	transcription start site region 48101
Cpgi16336	5	114796607 to 114797188	581		CpG island	CpG island 16336
1500011B03Rik	5	114808196 to 114813976	5780	-	protein coding gene	RIKEN cDNA 1500011B03 gene
Cpgi16337	5	114813584 to 114814135	551		CpG island	CpG island 16337
Tssr52732	5	114813902 to 114813937	35	-	TSS region	transcription start site region 52732
Tssr52733	5	114813943 to 114813964	21	-	TSS region	transcription start site region 52733
2610524H06Rik	5	114821937 to 114823468	1531	-	protein coding gene	RIKEN cDNA 2610524H06 gene
Cpgi16338	5	114823243 to 114823665	422		CpG island	CpG island 16338
Tssr52734	5	114823440 to 114823457	17	-	TSS region	transcription start site region 52734
Tssr52735	5	114823461 to 114823475	14	-	TSS region	transcription start site region 52735
Tssr52736	5	114823478 to 114823489	11	-	TSS region	transcription start site region 52736
Cpgi16339	5	114826289 to 114826660	371		CpG island	CpG island 16339
Tssr52737	5	114826332 to 114826339	7	-	TSS region	transcription start site region 52737
Ywhaq-ps2	5	114828573 to 114829215	642	-	pseudogene	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2
Gm46920	5	114836692 to 114841158	4466	+	lncRNA gene	predicted gene, 46920
Gm13821	5	114838875 to 114842075	3200	-	lncRNA gene	predicted gene 13821
Tssr48102	5	114851792 to 114851818	26	+	TSS region	transcription start site region 48102
Mir6240	5	114851948 to 114852064	116	+	miRNA gene	microRNA 6240
Tssr48103	5	114851964 to 114851980	16	+	TSS region	transcription start site region 48103
Tssr1607	5	114853575 to 114853588	13	-	TSS region	transcription start site region 1607
Tssr48104	5	114853660 to 114853667	7	+	TSS region	transcription start site region 48104
4930519G04Rik	5	114853664 to 114883880	30216	+	protein coding gene	RIKEN cDNA 4930519G04 gene
Tssr48105	5	114853708 to 114853721	13	+	TSS region	transcription start site region 48105
Gm9936	5	114855758 to 114858682	2924	-	protein coding gene	predicted gene 9936