Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114708681-115098697

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Diht 5 104350872 to 114963481 10612609 QTL dopamine-induced hypothermia
Tchp 5 114707765 to 114722327 14562 + protein coding gene trichoplein, keratin filament binding
Gm42789 5 114715554 to 114716120 566 - antisense lncRNA gene predicted gene 42789
Cpgi16333 5 114718587 to 114718746 159 CpG island CpG island 16333
Mir7028 5 114719515 to 114719578 63 + miRNA gene microRNA 7028
Git2 5 114727408 to 114773522 46114 - protein coding gene GIT ArfGAP 2
Tssr52724 5 114730354 to 114730378 24 - TSS region transcription start site region 52724
Tssr52725 5 114733286 to 114733314 28 - TSS region transcription start site region 52725
Tssr52726 5 114744831 to 114744832 1 - TSS region transcription start site region 52726
Tssr52727 5 114761945 to 114761975 30 - TSS region transcription start site region 52727
Cpgi16334 5 114772625 to 114773690 1065 CpG island CpG island 16334
Tssr52728 5 114772650 to 114772665 15 - TSS region transcription start site region 52728
Tssr48097 5 114772895 to 114772897 2 + TSS region transcription start site region 48097
Tssr52729 5 114773357 to 114773370 13 - TSS region transcription start site region 52729
Tssr52730 5 114773372 to 114773472 100 - TSS region transcription start site region 52730
Tssr52731 5 114773488 to 114773517 29 - TSS region transcription start site region 52731
4930515G01Rik 5 114773737 to 114774983 1246 - antisense lncRNA gene RIKEN cDNA 4930515G01 gene
Cpgi16335 5 114774294 to 114775757 1463 CpG island CpG island 16335
Ankrd13a 5 114774923 to 114805821 30898 + protein coding gene ankyrin repeat domain 13a
Tssr48098 5 114774939 to 114774957 18 + TSS region transcription start site region 48098
Tssr48099 5 114775942 to 114775952 10 + TSS region transcription start site region 48099
Tssr1606 5 114777721 to 114777741 20 + TSS region transcription start site region 1606
Tssr48100 5 114785747 to 114785761 14 + TSS region transcription start site region 48100
Tssr48101 5 114785781 to 114785791 10 + TSS region transcription start site region 48101
Cpgi16336 5 114796607 to 114797188 581 CpG island CpG island 16336
1500011B03Rik 5 114808196 to 114813976 5780 - protein coding gene RIKEN cDNA 1500011B03 gene
Cpgi16337 5 114813584 to 114814135 551 CpG island CpG island 16337
Tssr52732 5 114813902 to 114813937 35 - TSS region transcription start site region 52732
Tssr52733 5 114813943 to 114813964 21 - TSS region transcription start site region 52733
2610524H06Rik 5 114821937 to 114823468 1531 - protein coding gene RIKEN cDNA 2610524H06 gene
Cpgi16338 5 114823243 to 114823665 422 CpG island CpG island 16338
Tssr52734 5 114823440 to 114823457 17 - TSS region transcription start site region 52734
Tssr52735 5 114823461 to 114823475 14 - TSS region transcription start site region 52735
Tssr52736 5 114823478 to 114823489 11 - TSS region transcription start site region 52736
Cpgi16339 5 114826289 to 114826660 371 CpG island CpG island 16339
Tssr52737 5 114826332 to 114826339 7 - TSS region transcription start site region 52737
Ywhaq-ps2 5 114828573 to 114829215 642 - pseudogene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2
Gm46920 5 114836692 to 114841158 4466 + lncRNA gene predicted gene, 46920
Gm13821 5 114838875 to 114842075 3200 - lncRNA gene predicted gene 13821
Tssr48102 5 114851792 to 114851818 26 + TSS region transcription start site region 48102
Mir6240 5 114851948 to 114852064 116 + miRNA gene microRNA 6240
Tssr48103 5 114851964 to 114851980 16 + TSS region transcription start site region 48103
Tssr1607 5 114853575 to 114853588 13 - TSS region transcription start site region 1607
Tssr48104 5 114853660 to 114853667 7 + TSS region transcription start site region 48104
4930519G04Rik 5 114853664 to 114883880 30216 + protein coding gene RIKEN cDNA 4930519G04 gene
Tssr48105 5 114853708 to 114853721 13 + TSS region transcription start site region 48105
Gm9936 5 114855758 to 114858682 2924 - protein coding gene predicted gene 9936
Cpgi16340 5 114859345 to 114859628 283 CpG island CpG island 16340
Tssr52738 5 114859415 to 114859436 21 - TSS region transcription start site region 52738
Tssr48106 5 114865465 to 114865480 15 + TSS region transcription start site region 48106
Tssr48107 5 114865509 to 114865518 9 + TSS region transcription start site region 48107
Gm13823 5 114867681 to 114868025 344 - pseudogene predicted gene 13823
Tssr48108 5 114882467 to 114882474 7 + TSS region transcription start site region 48108
Tssr48109 5 114883351 to 114883360 9 + TSS region transcription start site region 48109
Tssr48110 5 114883366 to 114883372 6 + TSS region transcription start site region 48110
Tssr1608 5 114884219 to 114884249 30 - TSS region transcription start site region 1608
Oasl2 5 114896936 to 114912234 15298 + protein coding gene 2'-5' oligoadenylate synthetase-like 2
Tssr48111 5 114896962 to 114896990 28 + TSS region transcription start site region 48111
Tssr48112 5 114897498 to 114897514 16 + TSS region transcription start site region 48112
Tssr48113 5 114897521 to 114897599 78 + TSS region transcription start site region 48113
Tssr48114 5 114897604 to 114897615 11 + TSS region transcription start site region 48114
Tssr1609 5 114897626 to 114897633 7 + TSS region transcription start site region 1609
Tssr1610 5 114897639 to 114897643 4 + TSS region transcription start site region 1610
Tssr48115 5 114897753 to 114897764 11 + TSS region transcription start site region 48115
Tssr48116 5 114897770 to 114897826 56 + TSS region transcription start site region 48116
Tssr48117 5 114899757 to 114899772 15 + TSS region transcription start site region 48117
Tssr48118 5 114899930 to 114899975 45 + TSS region transcription start site region 48118
Tssr48119 5 114901298 to 114901325 27 + TSS region transcription start site region 48119
Tssr48120 5 114901412 to 114901419 7 + TSS region transcription start site region 48120
Tssr48121 5 114901532 to 114901550 18 + TSS region transcription start site region 48121
Tssr48122 5 114901850 to 114901866 16 + TSS region transcription start site region 48122
Tssr48123 5 114901946 to 114901972 26 + TSS region transcription start site region 48123
Tssr48124 5 114902629 to 114902668 39 + TSS region transcription start site region 48124
Tssr48125 5 114902729 to 114902747 18 + TSS region transcription start site region 48125
Tssr48126 5 114902788 to 114902822 34 + TSS region transcription start site region 48126
Tssr48127 5 114902838 to 114902850 12 + TSS region transcription start site region 48127
Tssr48128 5 114902855 to 114902874 19 + TSS region transcription start site region 48128
Tssr48129 5 114903374 to 114903389 15 + TSS region transcription start site region 48129
Tssr48130 5 114903450 to 114903474 24 + TSS region transcription start site region 48130
Tssr48131 5 114903493 to 114903503 10 + TSS region transcription start site region 48131
Tssr48132 5 114903640 to 114903665 25 + TSS region transcription start site region 48132
Tssr48133 5 114903681 to 114903697 16 + TSS region transcription start site region 48133
Tssr48134 5 114903759 to 114903770 11 + TSS region transcription start site region 48134
Tssr48135 5 114904835 to 114904846 11 + TSS region transcription start site region 48135
Tssr48136 5 114904905 to 114904919 14 + TSS region transcription start site region 48136
Tssr48137 5 114906680 to 114906694 14 + TSS region transcription start site region 48137
Tssr48138 5 114909897 to 114909909 12 + TSS region transcription start site region 48138
Tssr52739 5 114910986 to 114911003 17 - TSS region transcription start site region 52739
Tssr48139 5 114911011 to 114911022 11 + TSS region transcription start site region 48139
Tssr48140 5 114911045 to 114911056 11 + TSS region transcription start site region 48140
Tssr48141 5 114911254 to 114911273 19 + TSS region transcription start site region 48141
Tssr48142 5 114911353 to 114911363 10 + TSS region transcription start site region 48142
Tssr48143 5 114911382 to 114911406 24 + TSS region transcription start site region 48143
Tssr48144 5 114911435 to 114911446 11 + TSS region transcription start site region 48144
Tssr48145 5 114911491 to 114911513 22 + TSS region transcription start site region 48145
Tssr48146 5 114911540 to 114911579 39 + TSS region transcription start site region 48146
Tssr48147 5 114911582 to 114911594 12 + TSS region transcription start site region 48147
Tssr48148 5 114911644 to 114911660 16 + TSS region transcription start site region 48148
Tssr48149 5 114911671 to 114911680 9 + TSS region transcription start site region 48149
Tssr48150 5 114911682 to 114911693 11 + TSS region transcription start site region 48150
Tssr48151 5 114911700 to 114911735 35 + TSS region transcription start site region 48151
Tssr48152 5 114911782 to 114911793 11 + TSS region transcription start site region 48152
Tssr48153 5 114911872 to 114911883 11 + TSS region transcription start site region 48153
Tssr48154 5 114911884 to 114911899 15 + TSS region transcription start site region 48154
Gm13822 5 114917318 to 114922261 4943 - antisense lncRNA gene predicted gene 13822
Tssr52740 5 114921945 to 114921967 22 - TSS region transcription start site region 52740
Tssr52741 5 114922010 to 114922023 13 - TSS region transcription start site region 52741
Tssr48155 5 114922107 to 114922134 27 + TSS region transcription start site region 48155
Tssr52742 5 114922158 to 114922175 17 - TSS region transcription start site region 52742
Tssr48156 5 114922211 to 114922234 23 + TSS region transcription start site region 48156
Tssr48157 5 114922242 to 114922276 34 + TSS region transcription start site region 48157
Tssr48158 5 114922442 to 114922476 34 + TSS region transcription start site region 48158
Tssr48159 5 114922501 to 114922521 20 + TSS region transcription start site region 48159
Tssr48160 5 114922541 to 114922565 24 + TSS region transcription start site region 48160
Tssr48161 5 114923234 to 114923246 12 + TSS region transcription start site region 48161
Oasl1 5 114923240 to 114937915 14675 + protein coding gene 2'-5' oligoadenylate synthetase-like 1
Tssr48162 5 114923343 to 114923354 11 + TSS region transcription start site region 48162
Tssr48163 5 114923387 to 114923400 13 + TSS region transcription start site region 48163
Cpgi16341 5 114923433 to 114923609 176 CpG island CpG island 16341
Tssr52743 5 114923753 to 114923790 37 - TSS region transcription start site region 52743
Tssr48164 5 114924244 to 114924283 39 + TSS region transcription start site region 48164
Tssr48165 5 114925413 to 114925426 13 + TSS region transcription start site region 48165
Tssr48166 5 114928067 to 114928103 36 + TSS region transcription start site region 48166
Tssr48167 5 114928146 to 114928166 20 + TSS region transcription start site region 48167
Tssr48168 5 114928170 to 114928212 42 + TSS region transcription start site region 48168
Tssr48169 5 114929088 to 114929127 39 + TSS region transcription start site region 48169
Tssr48170 5 114929213 to 114929232 19 + TSS region transcription start site region 48170
Tssr48171 5 114929829 to 114929847 18 + TSS region transcription start site region 48171
Tssr48172 5 114929948 to 114929970 22 + TSS region transcription start site region 48172
Tssr48173 5 114932741 to 114932768 27 + TSS region transcription start site region 48173
Tssr48174 5 114932809 to 114932820 11 + TSS region transcription start site region 48174
Tssr48175 5 114932958 to 114932971 13 + TSS region transcription start site region 48175
Tssr48176 5 114933630 to 114933641 11 + TSS region transcription start site region 48176
Tssr48177 5 114933660 to 114933683 23 + TSS region transcription start site region 48177
Tssr48178 5 114934186 to 114934215 29 + TSS region transcription start site region 48178
Tssr48179 5 114935911 to 114935926 15 + TSS region transcription start site region 48179
Tssr52744 5 114935946 to 114935993 47 - TSS region transcription start site region 52744
Tssr48180 5 114935975 to 114935986 11 + TSS region transcription start site region 48180
Tssr48181 5 114936034 to 114936047 13 + TSS region transcription start site region 48181
Tssr48182 5 114936949 to 114936963 14 + TSS region transcription start site region 48182
Tssr48183 5 114936973 to 114936986 13 + TSS region transcription start site region 48183
Tssr48184 5 114937027 to 114937045 18 + TSS region transcription start site region 48184
Tssr48185 5 114937126 to 114937144 18 + TSS region transcription start site region 48185
Tssr48186 5 114937217 to 114937232 15 + TSS region transcription start site region 48186
Tssr48187 5 114937304 to 114937315 11 + TSS region transcription start site region 48187
Tssr48188 5 114937388 to 114937401 13 + TSS region transcription start site region 48188
Tssr48189 5 114937429 to 114937459 30 + TSS region transcription start site region 48189
Tssr48190 5 114937862 to 114937879 17 + TSS region transcription start site region 48190
Tssr48191 5 114937911 to 114937926 15 + TSS region transcription start site region 48191
Cpgi16342 5 114942057 to 114942690 633 CpG island CpG island 16342
2210016L21Rik 5 114942163 to 114948540 6377 + protein coding gene RIKEN cDNA 2210016L21 gene
Tssr48192 5 114942176 to 114942212 36 + TSS region transcription start site region 48192
Tssr48193 5 114942216 to 114942223 7 + TSS region transcription start site region 48193
Hnf1a 5 114948980 to 114971062 22082 - protein coding gene HNF1 homeobox A
Tssr52745 5 114950822 to 114950853 31 - TSS region transcription start site region 52745
Cpgi16343 5 114952469 to 114952711 242 CpG island CpG island 16343
Tssr52746 5 114952718 to 114952721 3 - TSS region transcription start site region 52746
Tssr52747 5 114952750 to 114952763 13 - TSS region transcription start site region 52747
Cpgi16344 5 114955315 to 114955506 191 CpG island CpG island 16344
D5Mit158 5 114963169 to 114963481 312 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 158
Tssr48194 5 114968759 to 114968773 14 + TSS region transcription start site region 48194
Hnf1aos1 5 114968784 to 114998042 29258 + antisense lncRNA gene HNF1 homeobox A, opposite strand 1
Tssr48195 5 114968789 to 114968808 19 + TSS region transcription start site region 48195
Hnf1aos2 5 114968823 to 114971400 2577 + antisense lncRNA gene HNF1 homeobox A, opposite strand 2
Tssr48196 5 114968828 to 114968835 7 + TSS region transcription start site region 48196
Tssr48197 5 114969870 to 114969885 15 + TSS region transcription start site region 48197
Cpgi16345 5 114970593 to 114970964 371 CpG island CpG island 16345
Tssr52748 5 114970873 to 114970887 14 - TSS region transcription start site region 52748
Tssr52749 5 114971056 to 114971079 23 - TSS region transcription start site region 52749
Tssr52750 5 114971117 to 114971128 11 - TSS region transcription start site region 52750
Tssr52751 5 114973316 to 114973335 19 - TSS region transcription start site region 52751
1810017P11Rik 5 114975456 to 114976013 557 + unclassified gene RIKEN cDNA 1810017P11 gene
Cpgi16346 5 114979250 to 114979420 170 CpG island CpG island 16346
Tssr48198 5 114989663 to 114989683 20 + TSS region transcription start site region 48198
Cpgi16347 5 114996587 to 114996786 199 CpG island CpG island 16347
Cpgi16348 5 115004291 to 115004701 410 CpG island CpG island 16348
Cpgi16349 5 115010619 to 115012501 1882 CpG island CpG island 16349
Tssr48199 5 115011111 to 115011208 97 + TSS region transcription start site region 48199
Tssr48200 5 115011322 to 115011335 13 + TSS region transcription start site region 48200
Tssr48201 5 115011347 to 115011403 56 + TSS region transcription start site region 48201
Sppl3 5 115011524 to 115098790 87266 + protein coding gene signal peptide peptidase 3
Tssr48202 5 115025528 to 115025533 5 + TSS region transcription start site region 48202
C730045M19Rik 5 115039770 to 115041084 1314 + unclassified gene RIKEN cDNA C730045M19 gene
Tssr48203 5 115053461 to 115053468 7 + TSS region transcription start site region 48203
Gm13827 5 115053469 to 115053840 371 - pseudogene predicted gene 13827
Tssr48204 5 115082260 to 115082278 18 + TSS region transcription start site region 48204
Gm10401 5 115097689 to 115098295 606 - unclassified gene predicted gene 10401