Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114673372-114873472

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gltp 5 114669490 to 114690935 21445 - protein coding gene glycolipid transfer protein
Tssr48095 5 114676321 to 114676337 16 + TSS region transcription start site region 48095
Cpgi16330 5 114690544 to 114691573 1029 CpG island CpG island 16330
Tssr52720 5 114690864 to 114690902 38 - TSS region transcription start site region 52720
Tssr52721 5 114690906 to 114690970 64 - TSS region transcription start site region 52721
Tssr52722 5 114690974 to 114690999 25 - TSS region transcription start site region 52722
Tssr52723 5 114691016 to 114691027 11 - TSS region transcription start site region 52723
Gm34931 5 114696983 to 114707819 10836 - lncRNA gene predicted gene, 34931
Cpgi16331 5 114697032 to 114697287 255 CpG island CpG island 16331
Cpgi16332 5 114707447 to 114708178 731 CpG island CpG island 16332
Tchp 5 114707765 to 114722327 14562 + protein coding gene trichoplein, keratin filament binding
Tssr48096 5 114707777 to 114707866 89 + TSS region transcription start site region 48096
Tssr1605 5 114707916 to 114707928 12 + TSS region transcription start site region 1605
Gm42789 5 114715554 to 114716120 566 - antisense lncRNA gene predicted gene 42789
Cpgi16333 5 114718587 to 114718746 159 CpG island CpG island 16333
Mir7028 5 114719515 to 114719578 63 + miRNA gene microRNA 7028
Git2 5 114727408 to 114773522 46114 - protein coding gene GIT ArfGAP 2
Tssr52724 5 114730354 to 114730378 24 - TSS region transcription start site region 52724
Tssr52725 5 114733286 to 114733314 28 - TSS region transcription start site region 52725
Tssr52726 5 114744831 to 114744832 1 - TSS region transcription start site region 52726
Tssr52727 5 114761945 to 114761975 30 - TSS region transcription start site region 52727
Cpgi16334 5 114772625 to 114773690 1065 CpG island CpG island 16334
Tssr52728 5 114772650 to 114772665 15 - TSS region transcription start site region 52728
Tssr48097 5 114772895 to 114772897 2 + TSS region transcription start site region 48097
Tssr52729 5 114773357 to 114773370 13 - TSS region transcription start site region 52729
Tssr52730 5 114773372 to 114773472 100 - TSS region transcription start site region 52730
Tssr52731 5 114773488 to 114773517 29 - TSS region transcription start site region 52731
4930515G01Rik 5 114773737 to 114774983 1246 - antisense lncRNA gene RIKEN cDNA 4930515G01 gene
Cpgi16335 5 114774294 to 114775757 1463 CpG island CpG island 16335
Ankrd13a 5 114774923 to 114805821 30898 + protein coding gene ankyrin repeat domain 13a
Tssr48098 5 114774939 to 114774957 18 + TSS region transcription start site region 48098
Tssr48099 5 114775942 to 114775952 10 + TSS region transcription start site region 48099
Tssr1606 5 114777721 to 114777741 20 + TSS region transcription start site region 1606
Tssr48100 5 114785747 to 114785761 14 + TSS region transcription start site region 48100
Tssr48101 5 114785781 to 114785791 10 + TSS region transcription start site region 48101
Cpgi16336 5 114796607 to 114797188 581 CpG island CpG island 16336
1500011B03Rik 5 114808196 to 114813976 5780 - protein coding gene RIKEN cDNA 1500011B03 gene
Cpgi16337 5 114813584 to 114814135 551 CpG island CpG island 16337
Tssr52732 5 114813902 to 114813937 35 - TSS region transcription start site region 52732
Tssr52733 5 114813943 to 114813964 21 - TSS region transcription start site region 52733
2610524H06Rik 5 114821937 to 114823468 1531 - protein coding gene RIKEN cDNA 2610524H06 gene
Cpgi16338 5 114823243 to 114823665 422 CpG island CpG island 16338
Tssr52734 5 114823440 to 114823457 17 - TSS region transcription start site region 52734
Tssr52735 5 114823461 to 114823475 14 - TSS region transcription start site region 52735
Tssr52736 5 114823478 to 114823489 11 - TSS region transcription start site region 52736
Cpgi16339 5 114826289 to 114826660 371 CpG island CpG island 16339
Tssr52737 5 114826332 to 114826339 7 - TSS region transcription start site region 52737
Ywhaq-ps2 5 114828573 to 114829215 642 - pseudogene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2
Gm46920 5 114836692 to 114841158 4466 + lncRNA gene predicted gene, 46920
Gm13821 5 114838875 to 114842075 3200 - lncRNA gene predicted gene 13821
Tssr48102 5 114851792 to 114851818 26 + TSS region transcription start site region 48102
Mir6240 5 114851948 to 114852064 116 + miRNA gene microRNA 6240
Tssr48103 5 114851964 to 114851980 16 + TSS region transcription start site region 48103
Tssr1607 5 114853575 to 114853588 13 - TSS region transcription start site region 1607
Tssr48104 5 114853660 to 114853667 7 + TSS region transcription start site region 48104
4930519G04Rik 5 114853664 to 114883880 30216 + protein coding gene RIKEN cDNA 4930519G04 gene
Tssr48105 5 114853708 to 114853721 13 + TSS region transcription start site region 48105
Gm9936 5 114855758 to 114858682 2924 - protein coding gene predicted gene 9936
Cpgi16340 5 114859345 to 114859628 283 CpG island CpG island 16340
Tssr52738 5 114859415 to 114859436 21 - TSS region transcription start site region 52738
Tssr48106 5 114865465 to 114865480 15 + TSS region transcription start site region 48106
Tssr48107 5 114865509 to 114865518 9 + TSS region transcription start site region 48107
Gm13823 5 114867681 to 114868025 344 - pseudogene predicted gene 13823