Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114468251-114713220

40 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Gm34722	5	114478990 to 114480223	1233	-	lncRNA gene	predicted gene, 34722
Cpgi16321	5	114485831 to 114486056	225		CpG island	CpG island 16321
D5Mit241	5	114486293 to 114486424	131		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 241
Cpgi16322	5	114537590 to 114537773	183		CpG island	CpG island 16322
Gm13790	5	114551289 to 114554016	2727	+	lincRNA gene	predicted gene 13790
Cpgi16323	5	114566799 to 114568608	1809		CpG island	CpG island 16323
Tssr48092	5	114567404 to 114567418	14	+	TSS region	transcription start site region 48092
Fam222a	5	114568251 to 114613220	44969	+	protein coding gene	family with sequence similarity 222, member A
Cpgi16324	5	114571416 to 114571900	484		CpG island	CpG island 16324
Gm34844	5	114591136 to 114604159	13023	-	lncRNA gene	predicted gene, 34844
Tssr48093	5	114597853 to 114597854	1	+	TSS region	transcription start site region 48093
Tssr1604	5	114601041 to 114601042	1	-	TSS region	transcription start site region 1604
Cpgi16325	5	114619411 to 114619613	202		CpG island	CpG island 16325
Trpv4	5	114622152 to 114658421	36269	-	protein coding gene	transient receptor potential cation channel, subfamily V, member 4
Tssr48094	5	114623660 to 114623661	1	+	TSS region	transcription start site region 48094
Cpgi16326	5	114636094 to 114636613	519		CpG island	CpG island 16326
Cpgi16327	5	114647693 to 114647995	302		CpG island	CpG island 16327
Cpgi16328	5	114657762 to 114658831	1069		CpG island	CpG island 16328
Tssr52712	5	114658364 to 114658379	15	-	TSS region	transcription start site region 52712
Tssr52713	5	114658382 to 114658413	31	-	TSS region	transcription start site region 52713
Tssr52714	5	114658414 to 114658424	10	-	TSS region	transcription start site region 52714
Cpgi16329	5	114667471 to 114667984	513		CpG island	CpG island 16329
Tssr52715	5	114667573 to 114667587	14	-	TSS region	transcription start site region 52715
Gltp	5	114669490 to 114690935	21445	-	protein coding gene	glycolipid transfer protein
Tssr52716	5	114669755 to 114669759	4	-	TSS region	transcription start site region 52716
Tssr52717	5	114669883 to 114669914	31	-	TSS region	transcription start site region 52717
Tssr52718	5	114670053 to 114670067	14	-	TSS region	transcription start site region 52718
Tssr52719	5	114670071 to 114670112	41	-	TSS region	transcription start site region 52719
Tssr48095	5	114676321 to 114676337	16	+	TSS region	transcription start site region 48095
Cpgi16330	5	114690544 to 114691573	1029		CpG island	CpG island 16330
Tssr52720	5	114690864 to 114690902	38	-	TSS region	transcription start site region 52720
Tssr52721	5	114690906 to 114690970	64	-	TSS region	transcription start site region 52721
Tssr52722	5	114690974 to 114690999	25	-	TSS region	transcription start site region 52722
Tssr52723	5	114691016 to 114691027	11	-	TSS region	transcription start site region 52723
Gm34931	5	114696983 to 114707819	10836	-	lncRNA gene	predicted gene, 34931
Cpgi16331	5	114697032 to 114697287	255		CpG island	CpG island 16331
Cpgi16332	5	114707447 to 114708178	731		CpG island	CpG island 16332
Tchp	5	114707765 to 114722327	14562	+	protein coding gene	trichoplein, keratin filament binding
Tssr48096	5	114707777 to 114707866	89	+	TSS region	transcription start site region 48096
Tssr1605	5	114707916 to 114707928	12	+	TSS region	transcription start site region 1605