Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:114266041-114936042

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226 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Foxn4 5 114254164 to 114273807 19643 - protein coding gene forkhead box N4
Cpgi16312 5 114268342 to 114268505 163 CpG island CpG island 16312
Tssr52697 5 114271162 to 114271164 2 - TSS region transcription start site region 52697
Cpgi16313 5 114273633 to 114274670 1037 CpG island CpG island 16313
Tssr52698 5 114273772 to 114273786 14 - TSS region transcription start site region 52698
Tssr1601 5 114273790 to 114273802 12 - TSS region transcription start site region 1601
Tssr52699 5 114273833 to 114273838 5 - TSS region transcription start site region 52699
Tssr52700 5 114274033 to 114274081 48 - TSS region transcription start site region 52700
Tssr52701 5 114274245 to 114274269 24 - TSS region transcription start site region 52701
Myo1h 5 114288899 to 114364576 75677 + protein coding gene myosin 1H
Cpgi16314 5 114289108 to 114289316 208 CpG island CpG island 16314
Tssr48077 5 114289245 to 114289258 13 + TSS region transcription start site region 48077
Tssr48078 5 114289268 to 114289278 10 + TSS region transcription start site region 48078
Cpgi16315 5 114309563 to 114309805 242 CpG island CpG island 16315
Cpgi16316 5 114314799 to 114315050 251 CpG island CpG island 16316
Tssr48079 5 114323346 to 114323358 12 + TSS region transcription start site region 48079
Kctd10 5 114363572 to 114380505 16933 - protein coding gene potassium channel tetramerisation domain containing 10
Tssr52702 5 114372277 to 114372289 12 - TSS region transcription start site region 52702
Tssr52703 5 114372625 to 114372656 31 - TSS region transcription start site region 52703
Tssr48080 5 114374793 to 114374798 5 + TSS region transcription start site region 48080
Cpgi16317 5 114374850 to 114375216 366 CpG island CpG island 16317
Tssr52704 5 114374990 to 114374996 6 - TSS region transcription start site region 52704
Tssr48081 5 114378943 to 114378957 14 + TSS region transcription start site region 48081
Tssr1602 5 114379078 to 114379106 28 - TSS region transcription start site region 1602
Cpgi16318 5 114379874 to 114381340 1466 CpG island CpG island 16318
Tssr1603 5 114380051 to 114380070 19 + TSS region transcription start site region 1603
Tssr52705 5 114380448 to 114380454 6 - TSS region transcription start site region 52705
Tssr52706 5 114380459 to 114380487 28 - TSS region transcription start site region 52706
Tssr52707 5 114380488 to 114380497 9 - TSS region transcription start site region 52707
Tssr52708 5 114380505 to 114380520 15 - TSS region transcription start site region 52708
Tssr48082 5 114380591 to 114380612 21 + TSS region transcription start site region 48082
Ube3b 5 114380607 to 114421169 40562 + protein coding gene ubiquitin protein ligase E3B
Tssr48083 5 114380815 to 114380851 36 + TSS region transcription start site region 48083
Mir7027 5 114404468 to 114404539 71 + miRNA gene microRNA 7027
Tssr48084 5 114406770 to 114406787 17 + TSS region transcription start site region 48084
Tssr48085 5 114408084 to 114408097 13 + TSS region transcription start site region 48085
Tssr48086 5 114412545 to 114412555 10 + TSS region transcription start site region 48086
Tssr48087 5 114412825 to 114412836 11 + TSS region transcription start site region 48087
Cpgi16319 5 114428655 to 114428932 277 CpG island CpG island 16319
Mmab 5 114431034 to 114444060 13026 - protein coding gene methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)
Cpgi16320 5 114443675 to 114444704 1029 CpG island CpG island 16320
Tssr52709 5 114443955 to 114443978 23 - TSS region transcription start site region 52709
Tssr52710 5 114443993 to 114444033 40 - TSS region transcription start site region 52710
Tssr52711 5 114444036 to 114444053 17 - TSS region transcription start site region 52711
Tssr48088 5 114444266 to 114444306 40 + TSS region transcription start site region 48088
Mvk 5 114444269 to 114460591 16322 + protein coding gene mevalonate kinase
Tssr48089 5 114444324 to 114444342 18 + TSS region transcription start site region 48089
Tssr48090 5 114444454 to 114444470 16 + TSS region transcription start site region 48090
Tssr48091 5 114450859 to 114450864 5 + TSS region transcription start site region 48091
Gm34722 5 114478990 to 114480223 1233 - lncRNA gene predicted gene, 34722
Cpgi16321 5 114485831 to 114486056 225 CpG island CpG island 16321
D5Mit241 5 114486293 to 114486424 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 241
Cpgi16322 5 114537590 to 114537773 183 CpG island CpG island 16322
Gm13790 5 114551289 to 114554016 2727 + lincRNA gene predicted gene 13790
Cpgi16323 5 114566799 to 114568608 1809 CpG island CpG island 16323
Tssr48092 5 114567404 to 114567418 14 + TSS region transcription start site region 48092
Fam222a 5 114568251 to 114613220 44969 + protein coding gene family with sequence similarity 222, member A
Cpgi16324 5 114571416 to 114571900 484 CpG island CpG island 16324
Gm34844 5 114591136 to 114604159 13023 - lncRNA gene predicted gene, 34844
Tssr48093 5 114597853 to 114597854 1 + TSS region transcription start site region 48093
Tssr1604 5 114601041 to 114601042 1 - TSS region transcription start site region 1604
Cpgi16325 5 114619411 to 114619613 202 CpG island CpG island 16325
Trpv4 5 114622152 to 114658421 36269 - protein coding gene transient receptor potential cation channel, subfamily V, member 4
Tssr48094 5 114623660 to 114623661 1 + TSS region transcription start site region 48094
Cpgi16326 5 114636094 to 114636613 519 CpG island CpG island 16326
Cpgi16327 5 114647693 to 114647995 302 CpG island CpG island 16327
Cpgi16328 5 114657762 to 114658831 1069 CpG island CpG island 16328
Tssr52712 5 114658364 to 114658379 15 - TSS region transcription start site region 52712
Tssr52713 5 114658382 to 114658413 31 - TSS region transcription start site region 52713
Tssr52714 5 114658414 to 114658424 10 - TSS region transcription start site region 52714
Cpgi16329 5 114667471 to 114667984 513 CpG island CpG island 16329
Tssr52715 5 114667573 to 114667587 14 - TSS region transcription start site region 52715
Gltp 5 114669490 to 114690935 21445 - protein coding gene glycolipid transfer protein
Tssr52716 5 114669755 to 114669759 4 - TSS region transcription start site region 52716
Tssr52717 5 114669883 to 114669914 31 - TSS region transcription start site region 52717
Tssr52718 5 114670053 to 114670067 14 - TSS region transcription start site region 52718
Tssr52719 5 114670071 to 114670112 41 - TSS region transcription start site region 52719
Tssr48095 5 114676321 to 114676337 16 + TSS region transcription start site region 48095
Cpgi16330 5 114690544 to 114691573 1029 CpG island CpG island 16330
Tssr52720 5 114690864 to 114690902 38 - TSS region transcription start site region 52720
Tssr52721 5 114690906 to 114690970 64 - TSS region transcription start site region 52721
Tssr52722 5 114690974 to 114690999 25 - TSS region transcription start site region 52722
Tssr52723 5 114691016 to 114691027 11 - TSS region transcription start site region 52723
Gm34931 5 114696983 to 114707819 10836 - lncRNA gene predicted gene, 34931
Cpgi16331 5 114697032 to 114697287 255 CpG island CpG island 16331
Cpgi16332 5 114707447 to 114708178 731 CpG island CpG island 16332
Tchp 5 114707765 to 114722327 14562 + protein coding gene trichoplein, keratin filament binding
Tssr48096 5 114707777 to 114707866 89 + TSS region transcription start site region 48096
Tssr1605 5 114707916 to 114707928 12 + TSS region transcription start site region 1605
Gm42789 5 114715554 to 114716120 566 - antisense lncRNA gene predicted gene 42789
Cpgi16333 5 114718587 to 114718746 159 CpG island CpG island 16333
Mir7028 5 114719515 to 114719578 63 + miRNA gene microRNA 7028
Git2 5 114727408 to 114773522 46114 - protein coding gene GIT ArfGAP 2
Tssr52724 5 114730354 to 114730378 24 - TSS region transcription start site region 52724
Tssr52725 5 114733286 to 114733314 28 - TSS region transcription start site region 52725
Tssr52726 5 114744831 to 114744832 1 - TSS region transcription start site region 52726
Tssr52727 5 114761945 to 114761975 30 - TSS region transcription start site region 52727
Cpgi16334 5 114772625 to 114773690 1065 CpG island CpG island 16334
Tssr52728 5 114772650 to 114772665 15 - TSS region transcription start site region 52728
Tssr48097 5 114772895 to 114772897 2 + TSS region transcription start site region 48097
Tssr52729 5 114773357 to 114773370 13 - TSS region transcription start site region 52729
Tssr52730 5 114773372 to 114773472 100 - TSS region transcription start site region 52730
Tssr52731 5 114773488 to 114773517 29 - TSS region transcription start site region 52731
4930515G01Rik 5 114773737 to 114774983 1246 - antisense lncRNA gene RIKEN cDNA 4930515G01 gene
Cpgi16335 5 114774294 to 114775757 1463 CpG island CpG island 16335
Ankrd13a 5 114774923 to 114805821 30898 + protein coding gene ankyrin repeat domain 13a
Tssr48098 5 114774939 to 114774957 18 + TSS region transcription start site region 48098
Tssr48099 5 114775942 to 114775952 10 + TSS region transcription start site region 48099
Tssr1606 5 114777721 to 114777741 20 + TSS region transcription start site region 1606
Tssr48100 5 114785747 to 114785761 14 + TSS region transcription start site region 48100
Tssr48101 5 114785781 to 114785791 10 + TSS region transcription start site region 48101
Cpgi16336 5 114796607 to 114797188 581 CpG island CpG island 16336
1500011B03Rik 5 114808196 to 114813976 5780 - protein coding gene RIKEN cDNA 1500011B03 gene
Cpgi16337 5 114813584 to 114814135 551 CpG island CpG island 16337
Tssr52732 5 114813902 to 114813937 35 - TSS region transcription start site region 52732
Tssr52733 5 114813943 to 114813964 21 - TSS region transcription start site region 52733
2610524H06Rik 5 114821937 to 114823468 1531 - protein coding gene RIKEN cDNA 2610524H06 gene
Cpgi16338 5 114823243 to 114823665 422 CpG island CpG island 16338
Tssr52734 5 114823440 to 114823457 17 - TSS region transcription start site region 52734
Tssr52735 5 114823461 to 114823475 14 - TSS region transcription start site region 52735
Tssr52736 5 114823478 to 114823489 11 - TSS region transcription start site region 52736
Cpgi16339 5 114826289 to 114826660 371 CpG island CpG island 16339
Tssr52737 5 114826332 to 114826339 7 - TSS region transcription start site region 52737
Ywhaq-ps2 5 114828573 to 114829215 642 - pseudogene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2
Gm46920 5 114836692 to 114841158 4466 + lncRNA gene predicted gene, 46920
Gm13821 5 114838875 to 114842075 3200 - lncRNA gene predicted gene 13821
Tssr48102 5 114851792 to 114851818 26 + TSS region transcription start site region 48102
Mir6240 5 114851948 to 114852064 116 + miRNA gene microRNA 6240
Tssr48103 5 114851964 to 114851980 16 + TSS region transcription start site region 48103
Tssr1607 5 114853575 to 114853588 13 - TSS region transcription start site region 1607
Tssr48104 5 114853660 to 114853667 7 + TSS region transcription start site region 48104
4930519G04Rik 5 114853664 to 114883880 30216 + protein coding gene RIKEN cDNA 4930519G04 gene
Tssr48105 5 114853708 to 114853721 13 + TSS region transcription start site region 48105
Gm9936 5 114855758 to 114858682 2924 - protein coding gene predicted gene 9936
Cpgi16340 5 114859345 to 114859628 283 CpG island CpG island 16340
Tssr52738 5 114859415 to 114859436 21 - TSS region transcription start site region 52738
Tssr48106 5 114865465 to 114865480 15 + TSS region transcription start site region 48106
Tssr48107 5 114865509 to 114865518 9 + TSS region transcription start site region 48107
Gm13823 5 114867681 to 114868025 344 - pseudogene predicted gene 13823
Tssr48108 5 114882467 to 114882474 7 + TSS region transcription start site region 48108
Tssr48109 5 114883351 to 114883360 9 + TSS region transcription start site region 48109
Tssr48110 5 114883366 to 114883372 6 + TSS region transcription start site region 48110
Tssr1608 5 114884219 to 114884249 30 - TSS region transcription start site region 1608
Oasl2 5 114896936 to 114912234 15298 + protein coding gene 2'-5' oligoadenylate synthetase-like 2
Tssr48111 5 114896962 to 114896990 28 + TSS region transcription start site region 48111
Tssr48112 5 114897498 to 114897514 16 + TSS region transcription start site region 48112
Tssr48113 5 114897521 to 114897599 78 + TSS region transcription start site region 48113
Tssr48114 5 114897604 to 114897615 11 + TSS region transcription start site region 48114
Tssr1609 5 114897626 to 114897633 7 + TSS region transcription start site region 1609
Tssr1610 5 114897639 to 114897643 4 + TSS region transcription start site region 1610
Tssr48115 5 114897753 to 114897764 11 + TSS region transcription start site region 48115
Tssr48116 5 114897770 to 114897826 56 + TSS region transcription start site region 48116
Tssr48117 5 114899757 to 114899772 15 + TSS region transcription start site region 48117
Tssr48118 5 114899930 to 114899975 45 + TSS region transcription start site region 48118
Tssr48119 5 114901298 to 114901325 27 + TSS region transcription start site region 48119
Tssr48120 5 114901412 to 114901419 7 + TSS region transcription start site region 48120
Tssr48121 5 114901532 to 114901550 18 + TSS region transcription start site region 48121
Tssr48122 5 114901850 to 114901866 16 + TSS region transcription start site region 48122
Tssr48123 5 114901946 to 114901972 26 + TSS region transcription start site region 48123
Tssr48124 5 114902629 to 114902668 39 + TSS region transcription start site region 48124
Tssr48125 5 114902729 to 114902747 18 + TSS region transcription start site region 48125
Tssr48126 5 114902788 to 114902822 34 + TSS region transcription start site region 48126
Tssr48127 5 114902838 to 114902850 12 + TSS region transcription start site region 48127
Tssr48128 5 114902855 to 114902874 19 + TSS region transcription start site region 48128
Tssr48129 5 114903374 to 114903389 15 + TSS region transcription start site region 48129
Tssr48130 5 114903450 to 114903474 24 + TSS region transcription start site region 48130
Tssr48131 5 114903493 to 114903503 10 + TSS region transcription start site region 48131
Tssr48132 5 114903640 to 114903665 25 + TSS region transcription start site region 48132
Tssr48133 5 114903681 to 114903697 16 + TSS region transcription start site region 48133
Tssr48134 5 114903759 to 114903770 11 + TSS region transcription start site region 48134
Tssr48135 5 114904835 to 114904846 11 + TSS region transcription start site region 48135
Tssr48136 5 114904905 to 114904919 14 + TSS region transcription start site region 48136
Tssr48137 5 114906680 to 114906694 14 + TSS region transcription start site region 48137
Tssr48138 5 114909897 to 114909909 12 + TSS region transcription start site region 48138
Tssr52739 5 114910986 to 114911003 17 - TSS region transcription start site region 52739
Tssr48139 5 114911011 to 114911022 11 + TSS region transcription start site region 48139
Tssr48140 5 114911045 to 114911056 11 + TSS region transcription start site region 48140
Tssr48141 5 114911254 to 114911273 19 + TSS region transcription start site region 48141
Tssr48142 5 114911353 to 114911363 10 + TSS region transcription start site region 48142
Tssr48143 5 114911382 to 114911406 24 + TSS region transcription start site region 48143
Tssr48144 5 114911435 to 114911446 11 + TSS region transcription start site region 48144
Tssr48145 5 114911491 to 114911513 22 + TSS region transcription start site region 48145
Tssr48146 5 114911540 to 114911579 39 + TSS region transcription start site region 48146
Tssr48147 5 114911582 to 114911594 12 + TSS region transcription start site region 48147
Tssr48148 5 114911644 to 114911660 16 + TSS region transcription start site region 48148
Tssr48149 5 114911671 to 114911680 9 + TSS region transcription start site region 48149
Tssr48150 5 114911682 to 114911693 11 + TSS region transcription start site region 48150
Tssr48151 5 114911700 to 114911735 35 + TSS region transcription start site region 48151
Tssr48152 5 114911782 to 114911793 11 + TSS region transcription start site region 48152
Tssr48153 5 114911872 to 114911883 11 + TSS region transcription start site region 48153
Tssr48154 5 114911884 to 114911899 15 + TSS region transcription start site region 48154
Gm13822 5 114917318 to 114922261 4943 - antisense lncRNA gene predicted gene 13822
Tssr52740 5 114921945 to 114921967 22 - TSS region transcription start site region 52740
Tssr52741 5 114922010 to 114922023 13 - TSS region transcription start site region 52741
Tssr48155 5 114922107 to 114922134 27 + TSS region transcription start site region 48155
Tssr52742 5 114922158 to 114922175 17 - TSS region transcription start site region 52742
Tssr48156 5 114922211 to 114922234 23 + TSS region transcription start site region 48156
Tssr48157 5 114922242 to 114922276 34 + TSS region transcription start site region 48157
Tssr48158 5 114922442 to 114922476 34 + TSS region transcription start site region 48158
Tssr48159 5 114922501 to 114922521 20 + TSS region transcription start site region 48159