Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113940509-115790518

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627 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Diht 5 104350872 to 114963481 10612609 QTL dopamine-induced hypothermia
Ssh1 5 113937097 to 113993757 56660 - protein coding gene slingshot protein phosphatase 1
Tssr52677 5 113945262 to 113945277 15 - TSS region transcription start site region 52677
Tssr48042 5 113945450 to 113945466 16 + TSS region transcription start site region 48042
Tssr48043 5 113945518 to 113945533 15 + TSS region transcription start site region 48043
Tssr52678 5 113952053 to 113952069 16 - TSS region transcription start site region 52678
Tssr52679 5 113952350 to 113952392 42 - TSS region transcription start site region 52679
Tssr52680 5 113961812 to 113961818 6 - TSS region transcription start site region 52680
Tssr52681 5 113972961 to 113972976 15 - TSS region transcription start site region 52681
Tssr52682 5 113974766 to 113974780 14 - TSS region transcription start site region 52682
Tssr52683 5 113974830 to 113974850 20 - TSS region transcription start site region 52683
Tssr52684 5 113988743 to 113988748 5 - TSS region transcription start site region 52684
Tssr52685 5 113989739 to 113989744 5 - TSS region transcription start site region 52685
Tssr48044 5 113989884 to 113989909 25 + TSS region transcription start site region 48044
Tssr52686 5 113992406 to 113992412 6 - TSS region transcription start site region 52686
Cpgi16305 5 113993125 to 113994377 1252 CpG island CpG island 16305
Tssr52687 5 113993740 to 113993806 66 - TSS region transcription start site region 52687
Tssr52688 5 113993873 to 113993902 29 - TSS region transcription start site region 52688
Tssr48045 5 114003678 to 114003693 15 + TSS region transcription start site region 48045
Dao 5 114003703 to 114025682 21979 + protein coding gene D-amino acid oxidase
Tssr1599 5 114003711 to 114003721 10 + TSS region transcription start site region 1599
Tssr48046 5 114003725 to 114003737 12 + TSS region transcription start site region 48046
Tssr48047 5 114003813 to 114003831 18 + TSS region transcription start site region 48047
Tssr48048 5 114003833 to 114003886 53 + TSS region transcription start site region 48048
Tssr48049 5 114004781 to 114004809 28 + TSS region transcription start site region 48049
Tssr48050 5 114005950 to 114005954 4 + TSS region transcription start site region 48050
Tssr48051 5 114022283 to 114022292 9 + TSS region transcription start site region 48051
Tssr1600 5 114025024 to 114025063 39 + TSS region transcription start site region 1600
Svop 5 114026913 to 114091423 64510 - protein coding gene SV2 related protein
Cpgi16306 5 114042790 to 114043241 451 CpG island CpG island 16306
Gm16108 5 114065242 to 114089466 24224 + lncRNA gene predicted gene 16108
Tssr48052 5 114065439 to 114065449 10 + TSS region transcription start site region 48052
Tssr48053 5 114065457 to 114065476 19 + TSS region transcription start site region 48053
Cpgi16307 5 114091066 to 114091515 449 CpG island CpG island 16307
Tssr52689 5 114091190 to 114091223 33 - TSS region transcription start site region 52689
Tssr52690 5 114091265 to 114091287 22 - TSS region transcription start site region 52690
Tssr52691 5 114091298 to 114091324 26 - TSS region transcription start site region 52691
Tssr52692 5 114091331 to 114091346 15 - TSS region transcription start site region 52692
Tssr52693 5 114091358 to 114091404 46 - TSS region transcription start site region 52693
Cpgi16308 5 114099834 to 114101221 1387 CpG island CpG island 16308
Tssr48054 5 114100308 to 114100369 61 + TSS region transcription start site region 48054
Usp30 5 114100328 to 114123510 23182 + protein coding gene ubiquitin specific peptidase 30
Tssr48055 5 114103339 to 114103370 31 + TSS region transcription start site region 48055
Gm17833 5 114109007 to 114110000 993 + pseudogene predicted gene, 17833
Gm42913 5 114115829 to 114117681 1852 + unclassified gene predicted gene 42913
Alkbh2 5 114123926 to 114128218 4292 - protein coding gene alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
Cpgi16309 5 114127345 to 114128398 1053 CpG island CpG island 16309
Tssr52694 5 114128171 to 114128219 48 - TSS region transcription start site region 52694
Cpgi16310 5 114130192 to 114131854 1662 CpG island CpG island 16310
Tssr48056 5 114130364 to 114130376 12 + TSS region transcription start site region 48056
Ung 5 114130386 to 114139323 8937 + protein coding gene uracil DNA glycosylase
Tssr48057 5 114130388 to 114130444 56 + TSS region transcription start site region 48057
Tssr52695 5 114130705 to 114130726 21 - TSS region transcription start site region 52695
Tssr48058 5 114131157 to 114131178 21 + TSS region transcription start site region 48058
Tssr48059 5 114131184 to 114131220 36 + TSS region transcription start site region 48059
Tssr52696 5 114131586 to 114131597 11 - TSS region transcription start site region 52696
Tssr48060 5 114132210 to 114132229 19 + TSS region transcription start site region 48060
Tssr48061 5 114143433 to 114143441 8 + TSS region transcription start site region 48061
Tssr48062 5 114143470 to 114143482 12 + TSS region transcription start site region 48062
Tssr48063 5 114146293 to 114146317 24 + TSS region transcription start site region 48063
Tssr48064 5 114146324 to 114146343 19 + TSS region transcription start site region 48064
Tssr48065 5 114146440 to 114146449 9 + TSS region transcription start site region 48065
Tssr48066 5 114146501 to 114146514 13 + TSS region transcription start site region 48066
Tssr48067 5 114146525 to 114146550 25 + TSS region transcription start site region 48067
Acacb 5 114146535 to 114250761 104226 + protein coding gene acetyl-Coenzyme A carboxylase beta
Tssr48068 5 114146566 to 114146610 44 + TSS region transcription start site region 48068
Tssr48069 5 114146675 to 114146715 40 + TSS region transcription start site region 48069
Tssr48070 5 114146717 to 114146735 18 + TSS region transcription start site region 48070
Tssr48071 5 114155426 to 114155433 7 + TSS region transcription start site region 48071
Tssr48072 5 114155453 to 114155467 14 + TSS region transcription start site region 48072
Tssr48073 5 114155471 to 114155515 44 + TSS region transcription start site region 48073
Cpgi16311 5 114175692 to 114176415 723 CpG island CpG island 16311
Tssr48074 5 114175889 to 114175938 49 + TSS region transcription start site region 48074
Tssr48075 5 114212044 to 114212049 5 + TSS region transcription start site region 48075
Gm13784 5 114237176 to 114237925 749 - pseudogene predicted gene 13784
Tssr48076 5 114248260 to 114248288 28 + TSS region transcription start site region 48076
Foxn4 5 114254164 to 114273807 19643 - protein coding gene forkhead box N4
Cpgi16312 5 114268342 to 114268505 163 CpG island CpG island 16312
Tssr52697 5 114271162 to 114271164 2 - TSS region transcription start site region 52697
Cpgi16313 5 114273633 to 114274670 1037 CpG island CpG island 16313
Tssr52698 5 114273772 to 114273786 14 - TSS region transcription start site region 52698
Tssr1601 5 114273790 to 114273802 12 - TSS region transcription start site region 1601
Tssr52699 5 114273833 to 114273838 5 - TSS region transcription start site region 52699
Tssr52700 5 114274033 to 114274081 48 - TSS region transcription start site region 52700
Tssr52701 5 114274245 to 114274269 24 - TSS region transcription start site region 52701
Myo1h 5 114288899 to 114364576 75677 + protein coding gene myosin 1H
Cpgi16314 5 114289108 to 114289316 208 CpG island CpG island 16314
Tssr48077 5 114289245 to 114289258 13 + TSS region transcription start site region 48077
Tssr48078 5 114289268 to 114289278 10 + TSS region transcription start site region 48078
Cpgi16315 5 114309563 to 114309805 242 CpG island CpG island 16315
Cpgi16316 5 114314799 to 114315050 251 CpG island CpG island 16316
Tssr48079 5 114323346 to 114323358 12 + TSS region transcription start site region 48079
Kctd10 5 114363572 to 114380505 16933 - protein coding gene potassium channel tetramerisation domain containing 10
Tssr52702 5 114372277 to 114372289 12 - TSS region transcription start site region 52702
Tssr52703 5 114372625 to 114372656 31 - TSS region transcription start site region 52703
Tssr48080 5 114374793 to 114374798 5 + TSS region transcription start site region 48080
Cpgi16317 5 114374850 to 114375216 366 CpG island CpG island 16317
Tssr52704 5 114374990 to 114374996 6 - TSS region transcription start site region 52704
Tssr48081 5 114378943 to 114378957 14 + TSS region transcription start site region 48081
Tssr1602 5 114379078 to 114379106 28 - TSS region transcription start site region 1602
Cpgi16318 5 114379874 to 114381340 1466 CpG island CpG island 16318
Tssr1603 5 114380051 to 114380070 19 + TSS region transcription start site region 1603
Tssr52705 5 114380448 to 114380454 6 - TSS region transcription start site region 52705
Tssr52706 5 114380459 to 114380487 28 - TSS region transcription start site region 52706
Tssr52707 5 114380488 to 114380497 9 - TSS region transcription start site region 52707
Tssr52708 5 114380505 to 114380520 15 - TSS region transcription start site region 52708
Tssr48082 5 114380591 to 114380612 21 + TSS region transcription start site region 48082
Ube3b 5 114380607 to 114421169 40562 + protein coding gene ubiquitin protein ligase E3B
Tssr48083 5 114380815 to 114380851 36 + TSS region transcription start site region 48083
Mir7027 5 114404468 to 114404539 71 + miRNA gene microRNA 7027
Tssr48084 5 114406770 to 114406787 17 + TSS region transcription start site region 48084
Tssr48085 5 114408084 to 114408097 13 + TSS region transcription start site region 48085
Tssr48086 5 114412545 to 114412555 10 + TSS region transcription start site region 48086
Tssr48087 5 114412825 to 114412836 11 + TSS region transcription start site region 48087
Cpgi16319 5 114428655 to 114428932 277 CpG island CpG island 16319
Mmab 5 114431034 to 114444060 13026 - protein coding gene methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)
Cpgi16320 5 114443675 to 114444704 1029 CpG island CpG island 16320
Tssr52709 5 114443955 to 114443978 23 - TSS region transcription start site region 52709
Tssr52710 5 114443993 to 114444033 40 - TSS region transcription start site region 52710
Tssr52711 5 114444036 to 114444053 17 - TSS region transcription start site region 52711
Tssr48088 5 114444266 to 114444306 40 + TSS region transcription start site region 48088
Mvk 5 114444269 to 114460591 16322 + protein coding gene mevalonate kinase
Tssr48089 5 114444324 to 114444342 18 + TSS region transcription start site region 48089
Tssr48090 5 114444454 to 114444470 16 + TSS region transcription start site region 48090
Tssr48091 5 114450859 to 114450864 5 + TSS region transcription start site region 48091
Gm34722 5 114478990 to 114480223 1233 - lncRNA gene predicted gene, 34722
Cpgi16321 5 114485831 to 114486056 225 CpG island CpG island 16321
D5Mit241 5 114486293 to 114486424 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 241
Cpgi16322 5 114537590 to 114537773 183 CpG island CpG island 16322
Gm13790 5 114551289 to 114554016 2727 + lincRNA gene predicted gene 13790
Cpgi16323 5 114566799 to 114568608 1809 CpG island CpG island 16323
Tssr48092 5 114567404 to 114567418 14 + TSS region transcription start site region 48092
Fam222a 5 114568251 to 114613220 44969 + protein coding gene family with sequence similarity 222, member A
Cpgi16324 5 114571416 to 114571900 484 CpG island CpG island 16324
Gm34844 5 114591136 to 114604159 13023 - lncRNA gene predicted gene, 34844
Tssr48093 5 114597853 to 114597854 1 + TSS region transcription start site region 48093
Tssr1604 5 114601041 to 114601042 1 - TSS region transcription start site region 1604
Cpgi16325 5 114619411 to 114619613 202 CpG island CpG island 16325
Trpv4 5 114622152 to 114658421 36269 - protein coding gene transient receptor potential cation channel, subfamily V, member 4
Tssr48094 5 114623660 to 114623661 1 + TSS region transcription start site region 48094
Cpgi16326 5 114636094 to 114636613 519 CpG island CpG island 16326
Cpgi16327 5 114647693 to 114647995 302 CpG island CpG island 16327
Cpgi16328 5 114657762 to 114658831 1069 CpG island CpG island 16328
Tssr52712 5 114658364 to 114658379 15 - TSS region transcription start site region 52712
Tssr52713 5 114658382 to 114658413 31 - TSS region transcription start site region 52713
Tssr52714 5 114658414 to 114658424 10 - TSS region transcription start site region 52714
Cpgi16329 5 114667471 to 114667984 513 CpG island CpG island 16329
Tssr52715 5 114667573 to 114667587 14 - TSS region transcription start site region 52715
Gltp 5 114669490 to 114690935 21445 - protein coding gene glycolipid transfer protein
Tssr52716 5 114669755 to 114669759 4 - TSS region transcription start site region 52716
Tssr52717 5 114669883 to 114669914 31 - TSS region transcription start site region 52717
Tssr52718 5 114670053 to 114670067 14 - TSS region transcription start site region 52718
Tssr52719 5 114670071 to 114670112 41 - TSS region transcription start site region 52719
Tssr48095 5 114676321 to 114676337 16 + TSS region transcription start site region 48095
Cpgi16330 5 114690544 to 114691573 1029 CpG island CpG island 16330
Tssr52720 5 114690864 to 114690902 38 - TSS region transcription start site region 52720
Tssr52721 5 114690906 to 114690970 64 - TSS region transcription start site region 52721
Tssr52722 5 114690974 to 114690999 25 - TSS region transcription start site region 52722
Tssr52723 5 114691016 to 114691027 11 - TSS region transcription start site region 52723
Gm34931 5 114696983 to 114707819 10836 - lncRNA gene predicted gene, 34931
Cpgi16331 5 114697032 to 114697287 255 CpG island CpG island 16331
Cpgi16332 5 114707447 to 114708178 731 CpG island CpG island 16332
Tchp 5 114707765 to 114722327 14562 + protein coding gene trichoplein, keratin filament binding
Tssr48096 5 114707777 to 114707866 89 + TSS region transcription start site region 48096
Tssr1605 5 114707916 to 114707928 12 + TSS region transcription start site region 1605
Gm42789 5 114715554 to 114716120 566 - antisense lncRNA gene predicted gene 42789
Cpgi16333 5 114718587 to 114718746 159 CpG island CpG island 16333
Mir7028 5 114719515 to 114719578 63 + miRNA gene microRNA 7028
Git2 5 114727408 to 114773522 46114 - protein coding gene GIT ArfGAP 2
Tssr52724 5 114730354 to 114730378 24 - TSS region transcription start site region 52724
Tssr52725 5 114733286 to 114733314 28 - TSS region transcription start site region 52725
Tssr52726 5 114744831 to 114744832 1 - TSS region transcription start site region 52726
Tssr52727 5 114761945 to 114761975 30 - TSS region transcription start site region 52727
Cpgi16334 5 114772625 to 114773690 1065 CpG island CpG island 16334
Tssr52728 5 114772650 to 114772665 15 - TSS region transcription start site region 52728
Tssr48097 5 114772895 to 114772897 2 + TSS region transcription start site region 48097
Tssr52729 5 114773357 to 114773370 13 - TSS region transcription start site region 52729
Tssr52730 5 114773372 to 114773472 100 - TSS region transcription start site region 52730
Tssr52731 5 114773488 to 114773517 29 - TSS region transcription start site region 52731
4930515G01Rik 5 114773737 to 114774983 1246 - antisense lncRNA gene RIKEN cDNA 4930515G01 gene
Cpgi16335 5 114774294 to 114775757 1463 CpG island CpG island 16335
Ankrd13a 5 114774923 to 114805821 30898 + protein coding gene ankyrin repeat domain 13a
Tssr48098 5 114774939 to 114774957 18 + TSS region transcription start site region 48098
Tssr48099 5 114775942 to 114775952 10 + TSS region transcription start site region 48099
Tssr1606 5 114777721 to 114777741 20 + TSS region transcription start site region 1606
Tssr48100 5 114785747 to 114785761 14 + TSS region transcription start site region 48100
Tssr48101 5 114785781 to 114785791 10 + TSS region transcription start site region 48101
Cpgi16336 5 114796607 to 114797188 581 CpG island CpG island 16336
1500011B03Rik 5 114808196 to 114813976 5780 - protein coding gene RIKEN cDNA 1500011B03 gene
Cpgi16337 5 114813584 to 114814135 551 CpG island CpG island 16337
Tssr52732 5 114813902 to 114813937 35 - TSS region transcription start site region 52732
Tssr52733 5 114813943 to 114813964 21 - TSS region transcription start site region 52733
2610524H06Rik 5 114821937 to 114823468 1531 - protein coding gene RIKEN cDNA 2610524H06 gene
Cpgi16338 5 114823243 to 114823665 422 CpG island CpG island 16338
Tssr52734 5 114823440 to 114823457 17 - TSS region transcription start site region 52734
Tssr52735 5 114823461 to 114823475 14 - TSS region transcription start site region 52735
Tssr52736 5 114823478 to 114823489 11 - TSS region transcription start site region 52736
Cpgi16339 5 114826289 to 114826660 371 CpG island CpG island 16339
Tssr52737 5 114826332 to 114826339 7 - TSS region transcription start site region 52737
Ywhaq-ps2 5 114828573 to 114829215 642 - pseudogene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta, pseudogene 2