Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113840395-113964898

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro14 5 108614643 to 113883925 5269282 heritable phenotypic marker reproductive mutant 14, JAX Reproductive Mutagenesis Program
Tssr48038 5 113842144 to 113842153 9 + TSS region transcription start site region 48038
Coro1c 5 113842439 to 113908706 66267 - protein coding gene coronin, actin binding protein 1C
Gm17122 5 113842601 to 113843116 515 + antisense lncRNA gene predicted gene 17122
Tssr52670 5 113843065 to 113843075 10 - TSS region transcription start site region 52670
Tssr48039 5 113843166 to 113843175 9 + TSS region transcription start site region 48039
Tssr52671 5 113843945 to 113843975 30 - TSS region transcription start site region 52671
Tssr52672 5 113844018 to 113844039 21 - TSS region transcription start site region 52672
Tssr52673 5 113844066 to 113844088 22 - TSS region transcription start site region 52673
Tssr52674 5 113844256 to 113844274 18 - TSS region transcription start site region 52674
Gm43335 5 113860161 to 113863436 3275 + unclassified gene predicted gene 43335
Tssr48040 5 113873145 to 113873152 7 + TSS region transcription start site region 48040
Gm42005 5 113875130 to 113877529 2399 + lncRNA gene predicted gene, 42005
Lprq4 5 113883692 to 129555542 15671850 QTL lipoprotein QTL 4
Smdq1 5 113883692 to 113883925 233 QTL segregation of mitochondrial DNA QTL 1
D5Mit25 5 113883692 to 113883925 233 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 25
Pcd8ts1 5 113883692 to 113883925 233 QTL p-glycoprotein positive CD8 T cell subset 1
Tir10 5 113883925 to 97871790 -16012135 QTL trypanosome infection response 10
Gm43336 5 113900395 to 113904898 4503 - unclassified gene predicted gene 43336
Tssr48041 5 113907210 to 113907216 6 + TSS region transcription start site region 48041
Cpgi16304 5 113907897 to 113909396 1499 CpG island CpG island 16304
Tssr52675 5 113908665 to 113908674 9 - TSS region transcription start site region 52675
Tssr52676 5 113908685 to 113908720 35 - TSS region transcription start site region 52676
Gm42797 5 113928555 to 113930134 1579 - lincRNA gene predicted gene 42797
Gm22056 5 113928724 to 113928804 80 - snRNA gene predicted gene, 22056
Ssh1 5 113937097 to 113993757 56660 - protein coding gene slingshot protein phosphatase 1
Tssr52677 5 113945262 to 113945277 15 - TSS region transcription start site region 52677
Tssr48042 5 113945450 to 113945466 16 + TSS region transcription start site region 48042
Tssr48043 5 113945518 to 113945533 15 + TSS region transcription start site region 48043
Tssr52678 5 113952053 to 113952069 16 - TSS region transcription start site region 52678
Tssr52679 5 113952350 to 113952392 42 - TSS region transcription start site region 52679
Tssr52680 5 113961812 to 113961818 6 - TSS region transcription start site region 52680