Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113837097-114093757

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro14 5 108614643 to 113883925 5269282 heritable phenotypic marker reproductive mutant 14, JAX Reproductive Mutagenesis Program
Cpgi16303 5 113837101 to 113837284 183 CpG island CpG island 16303
Tssr48038 5 113842144 to 113842153 9 + TSS region transcription start site region 48038
Coro1c 5 113842439 to 113908706 66267 - protein coding gene coronin, actin binding protein 1C
Gm17122 5 113842601 to 113843116 515 + antisense lncRNA gene predicted gene 17122
Tssr52670 5 113843065 to 113843075 10 - TSS region transcription start site region 52670
Tssr48039 5 113843166 to 113843175 9 + TSS region transcription start site region 48039
Tssr52671 5 113843945 to 113843975 30 - TSS region transcription start site region 52671
Tssr52672 5 113844018 to 113844039 21 - TSS region transcription start site region 52672
Tssr52673 5 113844066 to 113844088 22 - TSS region transcription start site region 52673
Tssr52674 5 113844256 to 113844274 18 - TSS region transcription start site region 52674
Gm43335 5 113860161 to 113863436 3275 + unclassified gene predicted gene 43335
Tssr48040 5 113873145 to 113873152 7 + TSS region transcription start site region 48040
Gm42005 5 113875130 to 113877529 2399 + lncRNA gene predicted gene, 42005
Pcd8ts1 5 113883692 to 113883925 233 QTL p-glycoprotein positive CD8 T cell subset 1
D5Mit25 5 113883692 to 113883925 233 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 25
Smdq1 5 113883692 to 113883925 233 QTL segregation of mitochondrial DNA QTL 1
Lprq4 5 113883692 to 129555542 15671850 QTL lipoprotein QTL 4
Tir10 5 113883925 to 97871790 -16012135 QTL trypanosome infection response 10
Gm43336 5 113900395 to 113904898 4503 - unclassified gene predicted gene 43336
Tssr48041 5 113907210 to 113907216 6 + TSS region transcription start site region 48041
Cpgi16304 5 113907897 to 113909396 1499 CpG island CpG island 16304
Tssr52675 5 113908665 to 113908674 9 - TSS region transcription start site region 52675
Tssr52676 5 113908685 to 113908720 35 - TSS region transcription start site region 52676
Gm42797 5 113928555 to 113930134 1579 - lincRNA gene predicted gene 42797
Gm22056 5 113928724 to 113928804 80 - snRNA gene predicted gene, 22056
Ssh1 5 113937097 to 113993757 56660 - protein coding gene slingshot protein phosphatase 1
Tssr52677 5 113945262 to 113945277 15 - TSS region transcription start site region 52677
Tssr48042 5 113945450 to 113945466 16 + TSS region transcription start site region 48042
Tssr48043 5 113945518 to 113945533 15 + TSS region transcription start site region 48043
Tssr52678 5 113952053 to 113952069 16 - TSS region transcription start site region 52678
Tssr52679 5 113952350 to 113952392 42 - TSS region transcription start site region 52679
Tssr52680 5 113961812 to 113961818 6 - TSS region transcription start site region 52680
Tssr52681 5 113972961 to 113972976 15 - TSS region transcription start site region 52681
Tssr52682 5 113974766 to 113974780 14 - TSS region transcription start site region 52682
Tssr52683 5 113974830 to 113974850 20 - TSS region transcription start site region 52683
Tssr52684 5 113988743 to 113988748 5 - TSS region transcription start site region 52684
Tssr52685 5 113989739 to 113989744 5 - TSS region transcription start site region 52685
Tssr48044 5 113989884 to 113989909 25 + TSS region transcription start site region 48044
Tssr52686 5 113992406 to 113992412 6 - TSS region transcription start site region 52686
Cpgi16305 5 113993125 to 113994377 1252 CpG island CpG island 16305
Tssr52687 5 113993740 to 113993806 66 - TSS region transcription start site region 52687
Tssr52688 5 113993873 to 113993902 29 - TSS region transcription start site region 52688
Tssr48045 5 114003678 to 114003693 15 + TSS region transcription start site region 48045
Dao 5 114003703 to 114025682 21979 + protein coding gene D-amino acid oxidase
Tssr1599 5 114003711 to 114003721 10 + TSS region transcription start site region 1599
Tssr48046 5 114003725 to 114003737 12 + TSS region transcription start site region 48046
Tssr48047 5 114003813 to 114003831 18 + TSS region transcription start site region 48047
Tssr48048 5 114003833 to 114003886 53 + TSS region transcription start site region 48048
Tssr48049 5 114004781 to 114004809 28 + TSS region transcription start site region 48049
Tssr48050 5 114005950 to 114005954 4 + TSS region transcription start site region 48050
Tssr48051 5 114022283 to 114022292 9 + TSS region transcription start site region 48051
Tssr1600 5 114025024 to 114025063 39 + TSS region transcription start site region 1600
Svop 5 114026913 to 114091423 64510 - protein coding gene SV2 related protein
Cpgi16306 5 114042790 to 114043241 451 CpG island CpG island 16306
Gm16108 5 114065242 to 114089466 24224 + lncRNA gene predicted gene 16108
Tssr48052 5 114065439 to 114065449 10 + TSS region transcription start site region 48052
Tssr48053 5 114065457 to 114065476 19 + TSS region transcription start site region 48053
Cpgi16307 5 114091066 to 114091515 449 CpG island CpG island 16307
Tssr52689 5 114091190 to 114091223 33 - TSS region transcription start site region 52689
Tssr52690 5 114091265 to 114091287 22 - TSS region transcription start site region 52690
Tssr52691 5 114091298 to 114091324 26 - TSS region transcription start site region 52691
Tssr52692 5 114091331 to 114091346 15 - TSS region transcription start site region 52692
Tssr52693 5 114091358 to 114091404 46 - TSS region transcription start site region 52693