Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:11383043-12457804

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
1700108N06Rik 5 11400212 to 11415204 14992 - lincRNA gene RIKEN cDNA 1700108N06 gene
Gm8897 5 11416418 to 11421235 4817 + protein coding gene predicted gene 8897
Gm29745 5 11426453 to 11427139 686 + pseudogene predicted gene, 29745
Gm43540 5 11460424 to 11464271 3847 + pseudogene predicted gene 43540
4930437M23Rik 5 11485335 to 11501452 16117 - lincRNA gene RIKEN cDNA 4930437M23 gene
Gm8906 5 11502685 to 11507417 4732 + protein coding gene predicted gene 8906
Gm21040 5 11512247 to 11513355 1108 + pseudogene predicted gene, 21040
Gm43640 5 11577108 to 11593779 16671 - lincRNA gene predicted gene 43640
Gm6460 5 11594956 to 11599480 4524 + protein coding gene predicted gene 6460
Gm8920 5 11604671 to 11605594 923 + pseudogene predicted gene 8920
Gm33847 5 11664167 to 11680740 16573 - lincRNA gene predicted gene, 33847
Gm8922 5 11681959 to 11686856 4897 + protein coding gene predicted gene 8922
Gm8924 5 11691659 to 11692790 1131 + pseudogene predicted gene 8924
1700003C15Rik 5 11749833 to 11769308 19475 - lincRNA gene RIKEN cDNA 1700003C15 gene
Gm8926 5 11770548 to 11775300 4752 + protein coding gene predicted gene 8926
Gm8929 5 11780123 to 11781228 1105 + pseudogene predicted gene 8929
Gm43132 5 11828046 to 11844359 16313 - lincRNA gene predicted gene 43132
Gm6465 5 11845539 to 11850352 4813 + protein coding gene predicted gene 6465
Gm29755 5 11855234 to 11856181 947 + pseudogene predicted gene, 29755
Gm34493 5 11894629 to 11898228 3599 - lncRNA gene predicted gene, 34493
Gm43131 5 11900483 to 11916836 16353 - lincRNA gene predicted gene 43131
4933402N22Rik 5 11918043 to 11922804 4761 + protein coding gene RIKEN cDNA 4933402N22 gene
Gm5288 5 11927622 to 11928718 1096 + pseudogene predicted gene 5288
Gm29066 5 12089537 to 12097647 8110 + lincRNA gene predicted gene 29066
Gm38242 5 12092020 to 12099441 7421 - unclassified gene predicted gene, 38242
Gm42910 5 12142041 to 12144961 2920 - unclassified gene predicted gene 42910
Gm8953 5 12354680 to 12355375 695 - pseudogene predicted gene 8953
Tssr50122 5 12355771 to 12355780 9 - TSS region transcription start site region 50122
Gmmq8 5 12371157 to 12371157 0 QTL gastrocnemius muscle mass QTL 8
Tssr45165 5 12374655 to 12374670 15 + TSS region transcription start site region 45165
Tssr45166 5 12383156 to 12383177 21 + TSS region transcription start site region 45166
Cpgi15547 5 12383193 to 12384026 833 CpG island CpG island 15547
Tssr45167 5 12383300 to 12383322 22 + TSS region transcription start site region 45167
Tssr45168 5 12383325 to 12383336 11 + TSS region transcription start site region 45168
Tssr45169 5 12383341 to 12383351 10 + TSS region transcription start site region 45169
Tssr45170 5 12383377 to 12383395 18 + TSS region transcription start site region 45170
Sema3d 5 12383385 to 12588948 205563 + protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D
Tssr45171 5 12383483 to 12383543 60 + TSS region transcription start site region 45171