Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113745453-114565467

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190 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro14 5 108614643 to 113883925 5269282 heritable phenotypic marker reproductive mutant 14, JAX Reproductive Mutagenesis Program
Sart3 5 113742444 to 113772505 30061 - protein coding gene squamous cell carcinoma antigen recognized by T cells 3
Gm3511 5 113767123 to 113767326 203 + pseudogene predicted gene 3511
Cpgi16300 5 113770917 to 113773401 2484 CpG island CpG island 16300
Tssr52651 5 113771643 to 113771659 16 - TSS region transcription start site region 52651
Tssr52652 5 113772635 to 113772706 71 - TSS region transcription start site region 52652
Tssr48032 5 113772786 to 113772827 41 + TSS region transcription start site region 48032
Iscu 5 113772812 to 113778282 5470 + protein coding gene iron-sulfur cluster assembly enzyme
Tmem119 5 113793729 to 113800358 6629 - protein coding gene transmembrane protein 119
Cpgi16301 5 113795379 to 113795929 550 CpG island CpG island 16301
Tssr52653 5 113800356 to 113800412 56 - TSS region transcription start site region 52653
Gm42004 5 113800591 to 113814984 14393 + lncRNA gene predicted gene, 42004
Tssr52654 5 113805430 to 113805432 2 - TSS region transcription start site region 52654
Gm19931 5 113817225 to 113817592 367 + pseudogene predicted gene, 19931
Selplg 5 113818536 to 113832644 14108 - protein coding gene selectin, platelet (p-selectin) ligand
Cpgi16302 5 113819149 to 113819452 303 CpG island CpG island 16302
Tssr52655 5 113819282 to 113819297 15 - TSS region transcription start site region 52655
Tssr52656 5 113819301 to 113819325 24 - TSS region transcription start site region 52656
Tssr48033 5 113819389 to 113819457 68 + TSS region transcription start site region 48033
Tssr48034 5 113819544 to 113819630 86 + TSS region transcription start site region 48034
Tssr52657 5 113820099 to 113820120 21 - TSS region transcription start site region 52657
Tssr52658 5 113820159 to 113820171 12 - TSS region transcription start site region 52658
Tssr52659 5 113823073 to 113823077 4 - TSS region transcription start site region 52659
Tssr52660 5 113824327 to 113824338 11 - TSS region transcription start site region 52660
Tssr52661 5 113825418 to 113825433 15 - TSS region transcription start site region 52661
Tssr48035 5 113827017 to 113827029 12 + TSS region transcription start site region 48035
Tssr48036 5 113828373 to 113828386 13 + TSS region transcription start site region 48036
Tssr48037 5 113828906 to 113828911 5 + TSS region transcription start site region 48037
Tssr52662 5 113830390 to 113830418 28 - TSS region transcription start site region 52662
Tssr52663 5 113830422 to 113830506 84 - TSS region transcription start site region 52663
Tssr52664 5 113830569 to 113830575 6 - TSS region transcription start site region 52664
Tssr52665 5 113832474 to 113832484 10 - TSS region transcription start site region 52665
Tssr52666 5 113832496 to 113832512 16 - TSS region transcription start site region 52666
Tssr52667 5 113832530 to 113832545 15 - TSS region transcription start site region 52667
Tssr52668 5 113832603 to 113832663 60 - TSS region transcription start site region 52668
Tssr52669 5 113832716 to 113832739 23 - TSS region transcription start site region 52669
Cpgi16303 5 113837101 to 113837284 183 CpG island CpG island 16303
Tssr48038 5 113842144 to 113842153 9 + TSS region transcription start site region 48038
Coro1c 5 113842439 to 113908706 66267 - protein coding gene coronin, actin binding protein 1C
Gm17122 5 113842601 to 113843116 515 + antisense lncRNA gene predicted gene 17122
Tssr52670 5 113843065 to 113843075 10 - TSS region transcription start site region 52670
Tssr48039 5 113843166 to 113843175 9 + TSS region transcription start site region 48039
Tssr52671 5 113843945 to 113843975 30 - TSS region transcription start site region 52671
Tssr52672 5 113844018 to 113844039 21 - TSS region transcription start site region 52672
Tssr52673 5 113844066 to 113844088 22 - TSS region transcription start site region 52673
Tssr52674 5 113844256 to 113844274 18 - TSS region transcription start site region 52674
Gm43335 5 113860161 to 113863436 3275 + unclassified gene predicted gene 43335
Tssr48040 5 113873145 to 113873152 7 + TSS region transcription start site region 48040
Gm42005 5 113875130 to 113877529 2399 + lncRNA gene predicted gene, 42005
Lprq4 5 113883692 to 129555542 15671850 QTL lipoprotein QTL 4
D5Mit25 5 113883692 to 113883925 233 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 25
Smdq1 5 113883692 to 113883925 233 QTL segregation of mitochondrial DNA QTL 1
Pcd8ts1 5 113883692 to 113883925 233 QTL p-glycoprotein positive CD8 T cell subset 1
Tir10 5 113883925 to 97871790 -16012135 QTL trypanosome infection response 10
Gm43336 5 113900395 to 113904898 4503 - unclassified gene predicted gene 43336
Tssr48041 5 113907210 to 113907216 6 + TSS region transcription start site region 48041
Cpgi16304 5 113907897 to 113909396 1499 CpG island CpG island 16304
Tssr52675 5 113908665 to 113908674 9 - TSS region transcription start site region 52675
Tssr52676 5 113908685 to 113908720 35 - TSS region transcription start site region 52676
Gm42797 5 113928555 to 113930134 1579 - lincRNA gene predicted gene 42797
Gm22056 5 113928724 to 113928804 80 - snRNA gene predicted gene, 22056
Ssh1 5 113937097 to 113993757 56660 - protein coding gene slingshot protein phosphatase 1
Tssr52677 5 113945262 to 113945277 15 - TSS region transcription start site region 52677
Tssr48042 5 113945450 to 113945466 16 + TSS region transcription start site region 48042
Tssr48043 5 113945518 to 113945533 15 + TSS region transcription start site region 48043
Tssr52678 5 113952053 to 113952069 16 - TSS region transcription start site region 52678
Tssr52679 5 113952350 to 113952392 42 - TSS region transcription start site region 52679
Tssr52680 5 113961812 to 113961818 6 - TSS region transcription start site region 52680
Tssr52681 5 113972961 to 113972976 15 - TSS region transcription start site region 52681
Tssr52682 5 113974766 to 113974780 14 - TSS region transcription start site region 52682
Tssr52683 5 113974830 to 113974850 20 - TSS region transcription start site region 52683
Tssr52684 5 113988743 to 113988748 5 - TSS region transcription start site region 52684
Tssr52685 5 113989739 to 113989744 5 - TSS region transcription start site region 52685
Tssr48044 5 113989884 to 113989909 25 + TSS region transcription start site region 48044
Tssr52686 5 113992406 to 113992412 6 - TSS region transcription start site region 52686
Cpgi16305 5 113993125 to 113994377 1252 CpG island CpG island 16305
Tssr52687 5 113993740 to 113993806 66 - TSS region transcription start site region 52687
Tssr52688 5 113993873 to 113993902 29 - TSS region transcription start site region 52688
Tssr48045 5 114003678 to 114003693 15 + TSS region transcription start site region 48045
Dao 5 114003703 to 114025682 21979 + protein coding gene D-amino acid oxidase
Tssr1599 5 114003711 to 114003721 10 + TSS region transcription start site region 1599
Tssr48046 5 114003725 to 114003737 12 + TSS region transcription start site region 48046
Tssr48047 5 114003813 to 114003831 18 + TSS region transcription start site region 48047
Tssr48048 5 114003833 to 114003886 53 + TSS region transcription start site region 48048
Tssr48049 5 114004781 to 114004809 28 + TSS region transcription start site region 48049
Tssr48050 5 114005950 to 114005954 4 + TSS region transcription start site region 48050
Tssr48051 5 114022283 to 114022292 9 + TSS region transcription start site region 48051
Tssr1600 5 114025024 to 114025063 39 + TSS region transcription start site region 1600
Svop 5 114026913 to 114091423 64510 - protein coding gene SV2 related protein
Cpgi16306 5 114042790 to 114043241 451 CpG island CpG island 16306
Gm16108 5 114065242 to 114089466 24224 + lncRNA gene predicted gene 16108
Tssr48052 5 114065439 to 114065449 10 + TSS region transcription start site region 48052
Tssr48053 5 114065457 to 114065476 19 + TSS region transcription start site region 48053
Cpgi16307 5 114091066 to 114091515 449 CpG island CpG island 16307
Tssr52689 5 114091190 to 114091223 33 - TSS region transcription start site region 52689
Tssr52690 5 114091265 to 114091287 22 - TSS region transcription start site region 52690
Tssr52691 5 114091298 to 114091324 26 - TSS region transcription start site region 52691
Tssr52692 5 114091331 to 114091346 15 - TSS region transcription start site region 52692
Tssr52693 5 114091358 to 114091404 46 - TSS region transcription start site region 52693
Cpgi16308 5 114099834 to 114101221 1387 CpG island CpG island 16308
Tssr48054 5 114100308 to 114100369 61 + TSS region transcription start site region 48054
Usp30 5 114100328 to 114123510 23182 + protein coding gene ubiquitin specific peptidase 30
Tssr48055 5 114103339 to 114103370 31 + TSS region transcription start site region 48055
Gm17833 5 114109007 to 114110000 993 + pseudogene predicted gene, 17833
Gm42913 5 114115829 to 114117681 1852 + unclassified gene predicted gene 42913
Alkbh2 5 114123926 to 114128218 4292 - protein coding gene alkB homolog 2, alpha-ketoglutarate-dependent dioxygenase
Cpgi16309 5 114127345 to 114128398 1053 CpG island CpG island 16309
Tssr52694 5 114128171 to 114128219 48 - TSS region transcription start site region 52694
Cpgi16310 5 114130192 to 114131854 1662 CpG island CpG island 16310
Tssr48056 5 114130364 to 114130376 12 + TSS region transcription start site region 48056
Ung 5 114130386 to 114139323 8937 + protein coding gene uracil DNA glycosylase
Tssr48057 5 114130388 to 114130444 56 + TSS region transcription start site region 48057
Tssr52695 5 114130705 to 114130726 21 - TSS region transcription start site region 52695
Tssr48058 5 114131157 to 114131178 21 + TSS region transcription start site region 48058
Tssr48059 5 114131184 to 114131220 36 + TSS region transcription start site region 48059
Tssr52696 5 114131586 to 114131597 11 - TSS region transcription start site region 52696
Tssr48060 5 114132210 to 114132229 19 + TSS region transcription start site region 48060
Tssr48061 5 114143433 to 114143441 8 + TSS region transcription start site region 48061
Tssr48062 5 114143470 to 114143482 12 + TSS region transcription start site region 48062
Tssr48063 5 114146293 to 114146317 24 + TSS region transcription start site region 48063
Tssr48064 5 114146324 to 114146343 19 + TSS region transcription start site region 48064
Tssr48065 5 114146440 to 114146449 9 + TSS region transcription start site region 48065
Tssr48066 5 114146501 to 114146514 13 + TSS region transcription start site region 48066
Tssr48067 5 114146525 to 114146550 25 + TSS region transcription start site region 48067
Acacb 5 114146535 to 114250761 104226 + protein coding gene acetyl-Coenzyme A carboxylase beta
Tssr48068 5 114146566 to 114146610 44 + TSS region transcription start site region 48068
Tssr48069 5 114146675 to 114146715 40 + TSS region transcription start site region 48069
Tssr48070 5 114146717 to 114146735 18 + TSS region transcription start site region 48070
Tssr48071 5 114155426 to 114155433 7 + TSS region transcription start site region 48071
Tssr48072 5 114155453 to 114155467 14 + TSS region transcription start site region 48072
Tssr48073 5 114155471 to 114155515 44 + TSS region transcription start site region 48073
Cpgi16311 5 114175692 to 114176415 723 CpG island CpG island 16311
Tssr48074 5 114175889 to 114175938 49 + TSS region transcription start site region 48074
Tssr48075 5 114212044 to 114212049 5 + TSS region transcription start site region 48075
Gm13784 5 114237176 to 114237925 749 - pseudogene predicted gene 13784
Tssr48076 5 114248260 to 114248288 28 + TSS region transcription start site region 48076
Foxn4 5 114254164 to 114273807 19643 - protein coding gene forkhead box N4
Cpgi16312 5 114268342 to 114268505 163 CpG island CpG island 16312
Tssr52697 5 114271162 to 114271164 2 - TSS region transcription start site region 52697
Cpgi16313 5 114273633 to 114274670 1037 CpG island CpG island 16313
Tssr52698 5 114273772 to 114273786 14 - TSS region transcription start site region 52698
Tssr1601 5 114273790 to 114273802 12 - TSS region transcription start site region 1601
Tssr52699 5 114273833 to 114273838 5 - TSS region transcription start site region 52699
Tssr52700 5 114274033 to 114274081 48 - TSS region transcription start site region 52700
Tssr52701 5 114274245 to 114274269 24 - TSS region transcription start site region 52701
Myo1h 5 114288899 to 114364576 75677 + protein coding gene myosin 1H
Cpgi16314 5 114289108 to 114289316 208 CpG island CpG island 16314
Tssr48077 5 114289245 to 114289258 13 + TSS region transcription start site region 48077
Tssr48078 5 114289268 to 114289278 10 + TSS region transcription start site region 48078
Cpgi16315 5 114309563 to 114309805 242 CpG island CpG island 16315
Cpgi16316 5 114314799 to 114315050 251 CpG island CpG island 16316
Tssr48079 5 114323346 to 114323358 12 + TSS region transcription start site region 48079
Kctd10 5 114363572 to 114380505 16933 - protein coding gene potassium channel tetramerisation domain containing 10
Tssr52702 5 114372277 to 114372289 12 - TSS region transcription start site region 52702
Tssr52703 5 114372625 to 114372656 31 - TSS region transcription start site region 52703
Tssr48080 5 114374793 to 114374798 5 + TSS region transcription start site region 48080
Cpgi16317 5 114374850 to 114375216 366 CpG island CpG island 16317
Tssr52704 5 114374990 to 114374996 6 - TSS region transcription start site region 52704
Tssr48081 5 114378943 to 114378957 14 + TSS region transcription start site region 48081
Tssr1602 5 114379078 to 114379106 28 - TSS region transcription start site region 1602
Cpgi16318 5 114379874 to 114381340 1466 CpG island CpG island 16318
Tssr1603 5 114380051 to 114380070 19 + TSS region transcription start site region 1603
Tssr52705 5 114380448 to 114380454 6 - TSS region transcription start site region 52705
Tssr52706 5 114380459 to 114380487 28 - TSS region transcription start site region 52706
Tssr52707 5 114380488 to 114380497 9 - TSS region transcription start site region 52707
Tssr52708 5 114380505 to 114380520 15 - TSS region transcription start site region 52708
Tssr48082 5 114380591 to 114380612 21 + TSS region transcription start site region 48082
Ube3b 5 114380607 to 114421169 40562 + protein coding gene ubiquitin protein ligase E3B
Tssr48083 5 114380815 to 114380851 36 + TSS region transcription start site region 48083
Mir7027 5 114404468 to 114404539 71 + miRNA gene microRNA 7027
Tssr48084 5 114406770 to 114406787 17 + TSS region transcription start site region 48084
Tssr48085 5 114408084 to 114408097 13 + TSS region transcription start site region 48085
Tssr48086 5 114412545 to 114412555 10 + TSS region transcription start site region 48086
Tssr48087 5 114412825 to 114412836 11 + TSS region transcription start site region 48087
Cpgi16319 5 114428655 to 114428932 277 CpG island CpG island 16319
Mmab 5 114431034 to 114444060 13026 - protein coding gene methylmalonic aciduria (cobalamin deficiency) cblB type homolog (human)
Cpgi16320 5 114443675 to 114444704 1029 CpG island CpG island 16320
Tssr52709 5 114443955 to 114443978 23 - TSS region transcription start site region 52709
Tssr52710 5 114443993 to 114444033 40 - TSS region transcription start site region 52710
Tssr52711 5 114444036 to 114444053 17 - TSS region transcription start site region 52711
Tssr48088 5 114444266 to 114444306 40 + TSS region transcription start site region 48088
Mvk 5 114444269 to 114460591 16322 + protein coding gene mevalonate kinase
Tssr48089 5 114444324 to 114444342 18 + TSS region transcription start site region 48089
Tssr48090 5 114444454 to 114444470 16 + TSS region transcription start site region 48090
Tssr48091 5 114450859 to 114450864 5 + TSS region transcription start site region 48091
Gm34722 5 114478990 to 114480223 1233 - lncRNA gene predicted gene, 34722
Cpgi16321 5 114485831 to 114486056 225 CpG island CpG island 16321
D5Mit241 5 114486293 to 114486424 131 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 241
Cpgi16322 5 114537590 to 114537773 183 CpG island CpG island 16322
Gm13790 5 114551289 to 114554016 2727 + lincRNA gene predicted gene 13790