Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113534259-113754281

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wscd2 5 113490333 to 113589725 99392 + protein coding gene WSC domain containing 2
Tssr48024 5 113539047 to 113539053 6 + TSS region transcription start site region 48024
Tssr48025 5 113539074 to 113539090 16 + TSS region transcription start site region 48025
Tssr1598 5 113550413 to 113550414 1 + TSS region transcription start site region 1598
Cpgi16293 5 113550813 to 113551234 421 CpG island CpG island 16293
Tssr48026 5 113550878 to 113550891 13 + TSS region transcription start site region 48026
Tssr48027 5 113550906 to 113550923 17 + TSS region transcription start site region 48027
Tssr48028 5 113550998 to 113551017 19 + TSS region transcription start site region 48028
Cpgi16294 5 113554198 to 113554396 198 CpG island CpG island 16294
Tssr52640 5 113586078 to 113586099 21 - TSS region transcription start site region 52640
Cpgi16295 5 113587737 to 113588096 359 CpG island CpG island 16295
Tssr48029 5 113589130 to 113589146 16 + TSS region transcription start site region 48029
Tssr52641 5 113596435 to 113596468 33 - TSS region transcription start site region 52641
Gm42002 5 113603228 to 113610998 7770 + lncRNA gene predicted gene, 42002
Cmklr1 5 113612354 to 113650426 38072 - protein coding gene chemokine-like receptor 1
Tssr52642 5 113614334 to 113614359 25 - TSS region transcription start site region 52642
Tssr52643 5 113639201 to 113639205 4 - TSS region transcription start site region 52643
Cpgi16296 5 113643505 to 113643753 248 CpG island CpG island 16296
Tssr52644 5 113644259 to 113644281 22 - TSS region transcription start site region 52644
Gm15736 5 113644963 to 113645682 719 + antisense lncRNA gene predicted gene 15736
Tssr52645 5 113650371 to 113650381 10 - TSS region transcription start site region 52645
Tssr52646 5 113650390 to 113650448 58 - TSS region transcription start site region 52646
Tssr52647 5 113650569 to 113650580 11 - TSS region transcription start site region 52647
Tssr52648 5 113654912 to 113654917 5 - TSS region transcription start site region 52648
1700069L16Rik 5 113692424 to 113724772 32348 - protein coding gene RIKEN cDNA 1700069L16 gene
Gm46919 5 113696020 to 113698711 2691 - lncRNA gene predicted gene, 46919
Tssr48030 5 113717377 to 113717414 37 + TSS region transcription start site region 48030
Cpgi16297 5 113724585 to 113724821 236 CpG island CpG island 16297
Tssr52649 5 113724771 to 113724788 17 - TSS region transcription start site region 52649
Cpgi16298 5 113727348 to 113727514 166 CpG island CpG island 16298
Cpgi16299 5 113735278 to 113736481 1203 CpG island CpG island 16299
Ficd 5 113735803 to 113740600 4797 + protein coding gene FIC domain containing
Tssr48031 5 113736003 to 113736030 27 + TSS region transcription start site region 48031
Sart3 5 113742444 to 113772505 30061 - protein coding gene squamous cell carcinoma antigen recognized by T cells 3
Tssr52650 5 113745188 to 113745197 9 - TSS region transcription start site region 52650