Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113330390-113970448

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
repro14 5 108614643 to 113883925 5269282 heritable phenotypic marker reproductive mutant 14, JAX Reproductive Mutagenesis Program
Tssr48013 5 113330654 to 113330666 12 + TSS region transcription start site region 48013
Tssr52632 5 113332796 to 113332801 5 - TSS region transcription start site region 52632
Tssr52633 5 113333321 to 113333325 4 - TSS region transcription start site region 52633
Cpgi16288 5 113335170 to 113335377 207 CpG island CpG island 16288
Tssr48014 5 113335267 to 113335278 11 + TSS region transcription start site region 48014
Mir7230 5 113337590 to 113337645 55 - miRNA gene microRNA 7230
Tssr52634 5 113340049 to 113340085 36 - TSS region transcription start site region 52634
Tssr52635 5 113340089 to 113340099 10 - TSS region transcription start site region 52635
Tssr48015 5 113340169 to 113340186 17 + TSS region transcription start site region 48015
Tssr52636 5 113347650 to 113347657 7 - TSS region transcription start site region 52636
1700016C19Rik 5 113349842 to 113357123 7281 + unclassified non-coding RNA gene RIKEN cDNA 1700016C19 gene
Aym1 5 113357294 to 113357821 527 + protein coding gene activator of yeast meiotic promoters 1
4930404F17Rik 5 113364311 to 113365728 1417 unclassified gene RIKEN cDNA 4930404F17 gene
Tssr1597 5 113364903 to 113364908 5 + TSS region transcription start site region 1597
Tssr48016 5 113364935 to 113364952 17 + TSS region transcription start site region 48016
Cpgi16289 5 113365987 to 113366317 330 CpG island CpG island 16289
Cpgi16290 5 113373254 to 113373736 482 CpG island CpG island 16290
Tssr52637 5 113413069 to 113413079 10 - TSS region transcription start site region 52637
Tssr52638 5 113413082 to 113413094 12 - TSS region transcription start site region 52638
Tssr48017 5 113445712 to 113445716 4 + TSS region transcription start site region 48017
Cpgi16291 5 113461577 to 113461801 224 CpG island CpG island 16291
Gm30812 5 113462249 to 113476183 13934 + lncRNA gene predicted gene, 30812
Tssr48018 5 113489104 to 113489125 21 + TSS region transcription start site region 48018
Wscd2 5 113490333 to 113589725 99392 + protein coding gene WSC domain containing 2
Cpgi16292 5 113490372 to 113491252 880 CpG island CpG island 16292
Tssr48019 5 113490515 to 113490548 33 + TSS region transcription start site region 48019
Tssr48020 5 113490580 to 113490598 18 + TSS region transcription start site region 48020
Tssr48021 5 113490735 to 113490760 25 + TSS region transcription start site region 48021
Tssr52639 5 113507165 to 113507168 3 - TSS region transcription start site region 52639
Tssr48022 5 113510839 to 113510845 6 + TSS region transcription start site region 48022
Tssr48023 5 113510899 to 113510905 6 + TSS region transcription start site region 48023
Tssr48024 5 113539047 to 113539053 6 + TSS region transcription start site region 48024
Tssr48025 5 113539074 to 113539090 16 + TSS region transcription start site region 48025
Tssr1598 5 113550413 to 113550414 1 + TSS region transcription start site region 1598
Cpgi16293 5 113550813 to 113551234 421 CpG island CpG island 16293
Tssr48026 5 113550878 to 113550891 13 + TSS region transcription start site region 48026
Tssr48027 5 113550906 to 113550923 17 + TSS region transcription start site region 48027
Tssr48028 5 113550998 to 113551017 19 + TSS region transcription start site region 48028
Cpgi16294 5 113554198 to 113554396 198 CpG island CpG island 16294
Tssr52640 5 113586078 to 113586099 21 - TSS region transcription start site region 52640
Cpgi16295 5 113587737 to 113588096 359 CpG island CpG island 16295
Tssr48029 5 113589130 to 113589146 16 + TSS region transcription start site region 48029
Tssr52641 5 113596435 to 113596468 33 - TSS region transcription start site region 52641
Gm42002 5 113603228 to 113610998 7770 + lncRNA gene predicted gene, 42002
Cmklr1 5 113612354 to 113650426 38072 - protein coding gene chemokine-like receptor 1
Tssr52642 5 113614334 to 113614359 25 - TSS region transcription start site region 52642
Tssr52643 5 113639201 to 113639205 4 - TSS region transcription start site region 52643
Cpgi16296 5 113643505 to 113643753 248 CpG island CpG island 16296
Tssr52644 5 113644259 to 113644281 22 - TSS region transcription start site region 52644
Gm15736 5 113644963 to 113645682 719 + antisense lncRNA gene predicted gene 15736
Tssr52645 5 113650371 to 113650381 10 - TSS region transcription start site region 52645
Tssr52646 5 113650390 to 113650448 58 - TSS region transcription start site region 52646
Tssr52647 5 113650569 to 113650580 11 - TSS region transcription start site region 52647
Tssr52648 5 113654912 to 113654917 5 - TSS region transcription start site region 52648
1700069L16Rik 5 113692424 to 113724772 32348 - protein coding gene RIKEN cDNA 1700069L16 gene
Gm46919 5 113696020 to 113698711 2691 - lncRNA gene predicted gene, 46919
Tssr48030 5 113717377 to 113717414 37 + TSS region transcription start site region 48030
Cpgi16297 5 113724585 to 113724821 236 CpG island CpG island 16297
Tssr52649 5 113724771 to 113724788 17 - TSS region transcription start site region 52649
Cpgi16298 5 113727348 to 113727514 166 CpG island CpG island 16298
Cpgi16299 5 113735278 to 113736481 1203 CpG island CpG island 16299
Ficd 5 113735803 to 113740600 4797 + protein coding gene FIC domain containing
Tssr48031 5 113736003 to 113736030 27 + TSS region transcription start site region 48031
Sart3 5 113742444 to 113772505 30061 - protein coding gene squamous cell carcinoma antigen recognized by T cells 3
Tssr52650 5 113745188 to 113745197 9 - TSS region transcription start site region 52650
Gm3511 5 113767123 to 113767326 203 + pseudogene predicted gene 3511
Cpgi16300 5 113770917 to 113773401 2484 CpG island CpG island 16300
Tssr52651 5 113771643 to 113771659 16 - TSS region transcription start site region 52651
Tssr52652 5 113772635 to 113772706 71 - TSS region transcription start site region 52652
Tssr48032 5 113772786 to 113772827 41 + TSS region transcription start site region 48032
Iscu 5 113772812 to 113778282 5470 + protein coding gene iron-sulfur cluster assembly enzyme
Tmem119 5 113793729 to 113800358 6629 - protein coding gene transmembrane protein 119
Cpgi16301 5 113795379 to 113795929 550 CpG island CpG island 16301
Tssr52653 5 113800356 to 113800412 56 - TSS region transcription start site region 52653
Gm42004 5 113800591 to 113814984 14393 + lncRNA gene predicted gene, 42004
Tssr52654 5 113805430 to 113805432 2 - TSS region transcription start site region 52654
Gm19931 5 113817225 to 113817592 367 + pseudogene predicted gene, 19931
Selplg 5 113818536 to 113832644 14108 - protein coding gene selectin, platelet (p-selectin) ligand
Cpgi16302 5 113819149 to 113819452 303 CpG island CpG island 16302
Tssr52655 5 113819282 to 113819297 15 - TSS region transcription start site region 52655
Tssr52656 5 113819301 to 113819325 24 - TSS region transcription start site region 52656
Tssr48033 5 113819389 to 113819457 68 + TSS region transcription start site region 48033
Tssr48034 5 113819544 to 113819630 86 + TSS region transcription start site region 48034
Tssr52657 5 113820099 to 113820120 21 - TSS region transcription start site region 52657
Tssr52658 5 113820159 to 113820171 12 - TSS region transcription start site region 52658
Tssr52659 5 113823073 to 113823077 4 - TSS region transcription start site region 52659
Tssr52660 5 113824327 to 113824338 11 - TSS region transcription start site region 52660
Tssr52661 5 113825418 to 113825433 15 - TSS region transcription start site region 52661
Tssr48035 5 113827017 to 113827029 12 + TSS region transcription start site region 48035
Tssr48036 5 113828373 to 113828386 13 + TSS region transcription start site region 48036
Tssr48037 5 113828906 to 113828911 5 + TSS region transcription start site region 48037
Tssr52662 5 113830390 to 113830418 28 - TSS region transcription start site region 52662
Tssr52663 5 113830422 to 113830506 84 - TSS region transcription start site region 52663
Tssr52664 5 113830569 to 113830575 6 - TSS region transcription start site region 52664
Tssr52665 5 113832474 to 113832484 10 - TSS region transcription start site region 52665
Tssr52666 5 113832496 to 113832512 16 - TSS region transcription start site region 52666
Tssr52667 5 113832530 to 113832545 15 - TSS region transcription start site region 52667
Tssr52668 5 113832603 to 113832663 60 - TSS region transcription start site region 52668
Tssr52669 5 113832716 to 113832739 23 - TSS region transcription start site region 52669
Cpgi16303 5 113837101 to 113837284 183 CpG island CpG island 16303
Tssr48038 5 113842144 to 113842153 9 + TSS region transcription start site region 48038
Coro1c 5 113842439 to 113908706 66267 - protein coding gene coronin, actin binding protein 1C
Gm17122 5 113842601 to 113843116 515 + antisense lncRNA gene predicted gene 17122
Tssr52670 5 113843065 to 113843075 10 - TSS region transcription start site region 52670
Tssr48039 5 113843166 to 113843175 9 + TSS region transcription start site region 48039
Tssr52671 5 113843945 to 113843975 30 - TSS region transcription start site region 52671
Tssr52672 5 113844018 to 113844039 21 - TSS region transcription start site region 52672
Tssr52673 5 113844066 to 113844088 22 - TSS region transcription start site region 52673
Tssr52674 5 113844256 to 113844274 18 - TSS region transcription start site region 52674
Gm43335 5 113860161 to 113863436 3275 + unclassified gene predicted gene 43335
Tssr48040 5 113873145 to 113873152 7 + TSS region transcription start site region 48040
Gm42005 5 113875130 to 113877529 2399 + lncRNA gene predicted gene, 42005
D5Mit25 5 113883692 to 113883925 233 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 25
Lprq4 5 113883692 to 129555542 15671850 QTL lipoprotein QTL 4
Pcd8ts1 5 113883692 to 113883925 233 QTL p-glycoprotein positive CD8 T cell subset 1
Smdq1 5 113883692 to 113883925 233 QTL segregation of mitochondrial DNA QTL 1
Tir10 5 113883925 to 97871790 -16012135 QTL trypanosome infection response 10
Gm43336 5 113900395 to 113904898 4503 - unclassified gene predicted gene 43336
Tssr48041 5 113907210 to 113907216 6 + TSS region transcription start site region 48041
Cpgi16304 5 113907897 to 113909396 1499 CpG island CpG island 16304
Tssr52675 5 113908665 to 113908674 9 - TSS region transcription start site region 52675
Tssr52676 5 113908685 to 113908720 35 - TSS region transcription start site region 52676
Gm42797 5 113928555 to 113930134 1579 - lincRNA gene predicted gene 42797
Gm22056 5 113928724 to 113928804 80 - snRNA gene predicted gene, 22056
Ssh1 5 113937097 to 113993757 56660 - protein coding gene slingshot protein phosphatase 1
Tssr52677 5 113945262 to 113945277 15 - TSS region transcription start site region 52677
Tssr48042 5 113945450 to 113945466 16 + TSS region transcription start site region 48042
Tssr48043 5 113945518 to 113945533 15 + TSS region transcription start site region 48043
Tssr52678 5 113952053 to 113952069 16 - TSS region transcription start site region 52678
Tssr52679 5 113952350 to 113952392 42 - TSS region transcription start site region 52679
Tssr52680 5 113961812 to 113961818 6 - TSS region transcription start site region 52680