Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:113121230-113321242

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46 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
2900026A02Rik 5 113086323 to 113221236 134913 - protein coding gene RIKEN cDNA 2900026A02 gene
Tssr48011 5 113137289 to 113137324 35 + TSS region transcription start site region 48011
Cpgi16279 5 113137653 to 113139053 1400 CpG island CpG island 16279
4833439F03Rik 5 113137885 to 113141124 3239 + lncRNA gene RIKEN cDNA 4833439F03 gene
Tssr52607 5 113138079 to 113138097 18 - TSS region transcription start site region 52607
Tssr52608 5 113138114 to 113138151 37 - TSS region transcription start site region 52608
Tssr52609 5 113138153 to 113138177 24 - TSS region transcription start site region 52609
Tssr52610 5 113138404 to 113138448 44 - TSS region transcription start site region 52610
Tssr52611 5 113138449 to 113138514 65 - TSS region transcription start site region 52611
Tssr52612 5 113138544 to 113138561 17 - TSS region transcription start site region 52612
Tssr48012 5 113138672 to 113138683 11 + TSS region transcription start site region 48012
Tssr52613 5 113138722 to 113138738 16 - TSS region transcription start site region 52613
Tssr52614 5 113138954 to 113138966 12 - TSS region transcription start site region 52614
4930557B06Rik 5 113142449 to 113142829 380 + unclassified gene RIKEN cDNA 4930557B06 gene
Gm42161 5 113145328 to 113154368 9040 + lincRNA gene predicted gene, 42161
Tssr52615 5 113163288 to 113163308 20 - TSS region transcription start site region 52615
Tssr52616 5 113163319 to 113163333 14 - TSS region transcription start site region 52616
Tssr52617 5 113163917 to 113163921 4 - TSS region transcription start site region 52617
4930554B03Rik 5 113165313 to 113166256 943 unclassified gene RIKEN cDNA 4930554B03 gene
Gm43094 5 113165314 to 113166234 920 - unclassified gene predicted gene 43094
Actd3 5 113172519 to 113172667 148 QTL activity-distance traveled 3
D5Mit278 5 113172519 to 113172667 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 278
Cia14 5 113172519 to 138557193 25384674 QTL collagen induced arthritis QTL 14
Cpgi16280 5 113179839 to 113180422 583 CpG island CpG island 16280
Tssr52618 5 113188661 to 113188704 43 - TSS region transcription start site region 52618
Tssr52619 5 113211951 to 113211956 5 - TSS region transcription start site region 52619
Tssr52620 5 113213372 to 113213405 33 - TSS region transcription start site region 52620
Tssr52621 5 113219516 to 113219527 11 - TSS region transcription start site region 52621
Tssr52622 5 113219538 to 113219549 11 - TSS region transcription start site region 52622
Tssr52623 5 113219551 to 113219591 40 - TSS region transcription start site region 52623
Tssr52624 5 113219633 to 113219642 9 - TSS region transcription start site region 52624
Cpgi16281 5 113220374 to 113221755 1381 CpG island CpG island 16281
Tssr52625 5 113221230 to 113221242 12 - TSS region transcription start site region 52625
Tssr52626 5 113221258 to 113221299 41 - TSS region transcription start site region 52626
Tmem211 5 113226909 to 113239263 12354 + protein coding gene transmembrane protein 211
Sgsm1 5 113243220 to 113310786 67566 - protein coding gene small G protein signaling modulator 1
Tssr52627 5 113280547 to 113280569 22 - TSS region transcription start site region 52627
Tssr52628 5 113280572 to 113280606 34 - TSS region transcription start site region 52628
Cpgi16282 5 113286697 to 113287818 1121 CpG island CpG island 16282
Cpgi16283 5 113301909 to 113302361 452 CpG island CpG island 16283
Cpgi16284 5 113306748 to 113307066 318 CpG island CpG island 16284
Cpgi16285 5 113310323 to 113311060 737 CpG island CpG island 16285
Tssr52629 5 113310712 to 113310727 15 - TSS region transcription start site region 52629
Tssr52630 5 113310729 to 113310788 59 - TSS region transcription start site region 52630
Cpgi16286 5 113314109 to 113314586 477 CpG island CpG island 16286
4930405N21Rik 5 113320454 to 113321653 1199 - unclassified gene RIKEN cDNA 4930405N21 gene