Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:112343278-113183278

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119 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16261 5 112342335 to 112343598 1263 CpG island CpG island 16261
Hps4 5 112343083 to 112378414 35331 + protein coding gene HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
Tssr52569 5 112343469 to 112343505 36 - TSS region transcription start site region 52569
Tssr48000 5 112344700 to 112344738 38 + TSS region transcription start site region 48000
Gm6583 5 112353801 to 112356033 2232 - protein coding gene predicted gene 6583
Gm43759 5 112367212 to 112368472 1260 + unclassified gene predicted gene 43759
Cpgi16262 5 112370055 to 112370227 172 CpG island CpG island 16262
Cpgi16263 5 112370486 to 112370736 250 CpG island CpG island 16263
Gm43758 5 112372585 to 112372951 366 - unclassified gene predicted gene 43758
Gm20636 5 112374369 to 112375234 865 - antisense lncRNA gene predicted gene 20636
Gm42158 5 112378415 to 112383911 5496 - lncRNA gene predicted gene, 42158
Asphd2 5 112384354 to 112394866 10512 - protein coding gene aspartate beta-hydroxylase domain containing 2
Cpgi16264 5 112391744 to 112391926 182 CpG island CpG island 16264
Cpgi16265 5 112394229 to 112395510 1281 CpG island CpG island 16265
Tssr52570 5 112394813 to 112394832 19 - TSS region transcription start site region 52570
Tssr52571 5 112394836 to 112394880 44 - TSS region transcription start site region 52571
Sez6l 5 112419151 to 112577185 158034 - protein coding gene seizure related 6 homolog like
Cpgi16266 5 112419655 to 112419826 171 CpG island CpG island 16266
Tssr52572 5 112419974 to 112419980 6 - TSS region transcription start site region 52572
Cpgi16267 5 112428890 to 112429268 378 CpG island CpG island 16267
Tssr48001 5 112449405 to 112449414 9 + TSS region transcription start site region 48001
Gm6588 5 112449426 to 112451738 2312 + protein coding gene predicted gene 6588
Cpgi16268 5 112475021 to 112475452 431 CpG island CpG island 16268
Tssr52573 5 112475775 to 112475780 5 - TSS region transcription start site region 52573
Tssr52574 5 112475866 to 112475875 9 - TSS region transcription start site region 52574
Tssr48002 5 112476353 to 112476399 46 + TSS region transcription start site region 48002
Gm42160 5 112476850 to 112479355 2505 + lncRNA gene predicted gene, 42160
Tssr52575 5 112522587 to 112522589 2 - TSS region transcription start site region 52575
Cpgi16269 5 112527122 to 112527292 170 CpG island CpG island 16269
Cpgi16270 5 112552810 to 112553027 217 CpG island CpG island 16270
Cpgi16271 5 112576344 to 112577782 1438 CpG island CpG island 16271
Tssr48003 5 112576435 to 112576443 8 + TSS region transcription start site region 48003
Tssr52576 5 112577149 to 112577177 28 - TSS region transcription start site region 52576
Tssr52577 5 112577186 to 112577204 18 - TSS region transcription start site region 52577
Tssr52578 5 112577906 to 112577925 19 - TSS region transcription start site region 52578
Gm27004 5 112582645 to 112583371 726 + lincRNA gene predicted gene, 27004
1700034G24Rik 5 112582936 to 112589996 7060 - lincRNA gene RIKEN cDNA 1700034G24 gene
Tssr52579 5 112589990 to 112590002 12 - TSS region transcription start site region 52579
Tssr52580 5 112590007 to 112590015 8 - TSS region transcription start site region 52580
Tssr52581 5 112590017 to 112590022 5 - TSS region transcription start site region 52581
Cpgi16272 5 112625434 to 112626079 645 CpG island CpG island 16272
4933415J04Rik 5 112640335 to 112641635 1300 + unclassified gene RIKEN cDNA 4933415J04 gene
Cpgi16273 5 112640772 to 112641515 743 CpG island CpG island 16273
Gm30529 5 112643830 to 112680538 36708 + lncRNA gene predicted gene, 30529
Gm42864 5 112649367 to 112652112 2745 + lincRNA gene predicted gene 42864
Gm42865 5 112675375 to 112680587 5212 + lincRNA gene predicted gene 42865
Myo18b 5 112688876 to 112896362 207486 - protein coding gene myosin XVIIIb
Cpgi16274 5 112692626 to 112692780 154 CpG island CpG island 16274
Mdq12 5 112763278 to 112763278 0 QTL mammary ductal QTL 12
Tssr52582 5 112765909 to 112765947 38 - TSS region transcription start site region 52582
Tssr52583 5 112766969 to 112766980 11 - TSS region transcription start site region 52583
Tssr52584 5 112767292 to 112767315 23 - TSS region transcription start site region 52584
Tssr52585 5 112767318 to 112767329 11 - TSS region transcription start site region 52585
Tssr52586 5 112767335 to 112767347 12 - TSS region transcription start site region 52586
Tssr52587 5 112771200 to 112771219 19 - TSS region transcription start site region 52587
D5Mit366 5 112787937 to 112788111 174 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 366
Tssr52588 5 112790703 to 112790713 10 - TSS region transcription start site region 52588
Tssr52589 5 112790714 to 112790732 18 - TSS region transcription start site region 52589
Tssr48004 5 112793256 to 112793265 9 + TSS region transcription start site region 48004
Tssr48005 5 112793277 to 112793297 20 + TSS region transcription start site region 48005
1700095B10Rik 5 112793292 to 112801701 8409 + antisense lncRNA gene RIKEN cDNA 1700095B10 gene
Tssr48006 5 112793331 to 112793338 7 + TSS region transcription start site region 48006
Tssr1596 5 112840465 to 112840469 4 + TSS region transcription start site region 1596
Cpgi16275 5 112848077 to 112848231 154 CpG island CpG island 16275
Tssr48007 5 112878043 to 112878047 4 + TSS region transcription start site region 48007
Tssr52590 5 112896350 to 112896405 55 - TSS region transcription start site region 52590
Tssr52591 5 112896413 to 112896424 11 - TSS region transcription start site region 52591
Grk3 5 112910482 to 113015791 105309 - protein coding gene G protein-coupled receptor kinase 3
Tssr52592 5 112966392 to 112966397 5 - TSS region transcription start site region 52592
Cpgi16276 5 113014929 to 113016091 1162 CpG island CpG island 16276
Tssr52593 5 113015473 to 113015567 94 - TSS region transcription start site region 52593
Tssr48008 5 113043427 to 113043428 1 + TSS region transcription start site region 48008
Gm22740 5 113044144 to 113044252 108 + snRNA gene predicted gene, 22740
Cpgi16277 5 113054321 to 113054491 170 CpG island CpG island 16277
Crybb2 5 113058258 to 113070117 11859 - protein coding gene crystallin, beta B2
Tssr48009 5 113060471 to 113060489 18 + TSS region transcription start site region 48009
Gm43247 5 113060488 to 113060949 461 + pseudogene predicted gene 43247
Tssr48010 5 113068710 to 113068724 14 + TSS region transcription start site region 48010
Tssr52594 5 113069658 to 113069661 3 - TSS region transcription start site region 52594
Tssr52595 5 113069752 to 113069764 12 - TSS region transcription start site region 52595
Crybb3 5 113075839 to 113081584 5745 - protein coding gene crystallin, beta B3
Tssr52596 5 113075871 to 113075896 25 - TSS region transcription start site region 52596
Cpgi16278 5 113075895 to 113076120 225 CpG island CpG island 16278
Tssr52597 5 113076539 to 113076543 4 - TSS region transcription start site region 52597
Tssr52598 5 113076986 to 113077005 19 - TSS region transcription start site region 52598
Tssr52599 5 113077122 to 113077131 9 - TSS region transcription start site region 52599
Tssr52600 5 113077150 to 113077164 14 - TSS region transcription start site region 52600
Tssr52601 5 113077170 to 113077182 12 - TSS region transcription start site region 52601
Tssr52602 5 113077203 to 113077223 20 - TSS region transcription start site region 52602
Tssr52603 5 113077230 to 113077239 9 - TSS region transcription start site region 52603
Tssr52604 5 113078450 to 113078463 13 - TSS region transcription start site region 52604
Tssr52605 5 113080566 to 113080578 12 - TSS region transcription start site region 52605
Tssr52606 5 113081580 to 113081584 4 - TSS region transcription start site region 52606
2900026A02Rik 5 113086323 to 113221236 134913 - protein coding gene RIKEN cDNA 2900026A02 gene
Gm43246 5 113100516 to 113101079 563 + unclassified gene predicted gene 43246
F830115B05Rik 5 113117571 to 113119464 1893 - unclassified non-coding RNA gene RIKEN cDNA F830115B05 gene
Tssr48011 5 113137289 to 113137324 35 + TSS region transcription start site region 48011
Cpgi16279 5 113137653 to 113139053 1400 CpG island CpG island 16279
4833439F03Rik 5 113137885 to 113141124 3239 + lncRNA gene RIKEN cDNA 4833439F03 gene
Tssr52607 5 113138079 to 113138097 18 - TSS region transcription start site region 52607
Tssr52608 5 113138114 to 113138151 37 - TSS region transcription start site region 52608
Tssr52609 5 113138153 to 113138177 24 - TSS region transcription start site region 52609
Tssr52610 5 113138404 to 113138448 44 - TSS region transcription start site region 52610
Tssr52611 5 113138449 to 113138514 65 - TSS region transcription start site region 52611
Tssr52612 5 113138544 to 113138561 17 - TSS region transcription start site region 52612
Tssr48012 5 113138672 to 113138683 11 + TSS region transcription start site region 48012
Tssr52613 5 113138722 to 113138738 16 - TSS region transcription start site region 52613
Tssr52614 5 113138954 to 113138966 12 - TSS region transcription start site region 52614
4930557B06Rik 5 113142449 to 113142829 380 + unclassified gene RIKEN cDNA 4930557B06 gene
Gm42161 5 113145328 to 113154368 9040 + lincRNA gene predicted gene, 42161
Tssr52615 5 113163288 to 113163308 20 - TSS region transcription start site region 52615
Tssr52616 5 113163319 to 113163333 14 - TSS region transcription start site region 52616
Tssr52617 5 113163917 to 113163921 4 - TSS region transcription start site region 52617
4930554B03Rik 5 113165313 to 113166256 943 unclassified gene RIKEN cDNA 4930554B03 gene
Gm43094 5 113165314 to 113166234 920 - unclassified gene predicted gene 43094
D5Mit278 5 113172519 to 113172667 148 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 278
Actd3 5 113172519 to 113172667 148 QTL activity-distance traveled 3
Cia14 5 113172519 to 138557193 25384674 QTL collagen induced arthritis QTL 14
Cpgi16280 5 113179839 to 113180422 583 CpG island CpG island 16280