Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:112293083-112428414

39 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tpst2	5	112276691 to 112315361	38670	+	protein coding gene	protein-tyrosine sulfotransferase 2
Tssr47994	5	112309820 to 112309863	43	+	TSS region	transcription start site region 47994
D5Mit24	5	112317683 to 112317856	173		DNA segment	DNA segment, Chr 5, Massachusetts Institute of Technology 24
Dipa1	5	112317683 to 112317856	173		QTL	drug induced psychomotor activation 1
Ahl19	5	112317683 to 112317856	173		QTL	age related hearing loss, early onset 19
Lith17	5	112317683 to 112317856	173		QTL	lithogenic gene 17
Bbaa3	5	112317856 to 99307426	-13010430		QTL	B.burgdorferi-associated arthritis 3
Lmb2	5	112317856 to 37424144	-74893712		QTL	lupus in MRL and B6 F2 cross, QTL 2
Cpgi16259	5	112324680 to 112324939	259		CpG island	CpG island 16259
Tssr47995	5	112325440 to 112325452	12	+	TSS region	transcription start site region 47995
Cpgi16260	5	112326028 to 112326923	895		CpG island	CpG island 16260
Tssr52566	5	112326236 to 112326267	31	-	TSS region	transcription start site region 52566
Tssr47996	5	112326352 to 112326426	74	+	TSS region	transcription start site region 47996
Tfip11	5	112326369 to 112338073	11704	+	protein coding gene	tuftelin interacting protein 11
Tssr47997	5	112326428 to 112326442	14	+	TSS region	transcription start site region 47997
Tssr47998	5	112326802 to 112326816	14	+	TSS region	transcription start site region 47998
Srrd	5	112337392 to 112343040	5648	-	protein coding gene	SRR1 domain containing
Cpgi16261	5	112342335 to 112343598	1263		CpG island	CpG island 16261
Tssr52567	5	112342971 to 112342986	15	-	TSS region	transcription start site region 52567
Tssr52568	5	112343010 to 112343050	40	-	TSS region	transcription start site region 52568
Tssr47999	5	112343068 to 112343138	70	+	TSS region	transcription start site region 47999
Hps4	5	112343083 to 112378414	35331	+	protein coding gene	HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
Tssr52569	5	112343469 to 112343505	36	-	TSS region	transcription start site region 52569
Tssr48000	5	112344700 to 112344738	38	+	TSS region	transcription start site region 48000
Gm6583	5	112353801 to 112356033	2232	-	protein coding gene	predicted gene 6583
Gm43759	5	112367212 to 112368472	1260	+	unclassified gene	predicted gene 43759
Cpgi16262	5	112370055 to 112370227	172		CpG island	CpG island 16262
Cpgi16263	5	112370486 to 112370736	250		CpG island	CpG island 16263
Gm43758	5	112372585 to 112372951	366	-	unclassified gene	predicted gene 43758
Gm20636	5	112374369 to 112375234	865	-	antisense lncRNA gene	predicted gene 20636
Gm42158	5	112378415 to 112383911	5496	-	lncRNA gene	predicted gene, 42158
Asphd2	5	112384354 to 112394866	10512	-	protein coding gene	aspartate beta-hydroxylase domain containing 2
Cpgi16264	5	112391744 to 112391926	182		CpG island	CpG island 16264
Cpgi16265	5	112394229 to 112395510	1281		CpG island	CpG island 16265
Tssr52570	5	112394813 to 112394832	19	-	TSS region	transcription start site region 52570
Tssr52571	5	112394836 to 112394880	44	-	TSS region	transcription start site region 52571
Sez6l	5	112419151 to 112577185	158034	-	protein coding gene	seizure related 6 homolog like
Cpgi16266	5	112419655 to 112419826	171		CpG island	CpG island 16266
Tssr52572	5	112419974 to 112419980	6	-	TSS region	transcription start site region 52572