Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:112284354-112494866

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdmsc2 5 107413140 to 112286920 4873780 QTL modifier of muscularity 2
Tpst2 5 112276691 to 112315361 38670 + protein coding gene protein-tyrosine sulfotransferase 2
Tssr47990 5 112286122 to 112286141 19 + TSS region transcription start site region 47990
Egrd1 5 112286714 to 112286920 206 QTL early growth rate, direct effect 1
D5Mit26 5 112286714 to 112286920 206 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 26
Tssr47991 5 112288734 to 112288768 34 + TSS region transcription start site region 47991
Tssr1593 5 112292111 to 112292114 3 + TSS region transcription start site region 1593
Tssr1594 5 112292176 to 112292183 7 + TSS region transcription start site region 1594
Tssr1595 5 112292197 to 112292200 3 + TSS region transcription start site region 1595
Tssr47992 5 112292225 to 112292261 36 + TSS region transcription start site region 47992
Tssr47993 5 112292303 to 112292308 5 + TSS region transcription start site region 47993
Tssr47994 5 112309820 to 112309863 43 + TSS region transcription start site region 47994
Lith17 5 112317683 to 112317856 173 QTL lithogenic gene 17
Ahl19 5 112317683 to 112317856 173 QTL age related hearing loss, early onset 19
D5Mit24 5 112317683 to 112317856 173 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 24
Dipa1 5 112317683 to 112317856 173 QTL drug induced psychomotor activation 1
Bbaa3 5 112317856 to 99307426 -13010430 QTL B.burgdorferi-associated arthritis 3
Lmb2 5 112317856 to 37424144 -74893712 QTL lupus in MRL and B6 F2 cross, QTL 2
Cpgi16259 5 112324680 to 112324939 259 CpG island CpG island 16259
Tssr47995 5 112325440 to 112325452 12 + TSS region transcription start site region 47995
Cpgi16260 5 112326028 to 112326923 895 CpG island CpG island 16260
Tssr52566 5 112326236 to 112326267 31 - TSS region transcription start site region 52566
Tssr47996 5 112326352 to 112326426 74 + TSS region transcription start site region 47996
Tfip11 5 112326369 to 112338073 11704 + protein coding gene tuftelin interacting protein 11
Tssr47997 5 112326428 to 112326442 14 + TSS region transcription start site region 47997
Tssr47998 5 112326802 to 112326816 14 + TSS region transcription start site region 47998
Srrd 5 112337392 to 112343040 5648 - protein coding gene SRR1 domain containing
Cpgi16261 5 112342335 to 112343598 1263 CpG island CpG island 16261
Tssr52567 5 112342971 to 112342986 15 - TSS region transcription start site region 52567
Tssr52568 5 112343010 to 112343050 40 - TSS region transcription start site region 52568
Tssr47999 5 112343068 to 112343138 70 + TSS region transcription start site region 47999
Hps4 5 112343083 to 112378414 35331 + protein coding gene HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
Tssr52569 5 112343469 to 112343505 36 - TSS region transcription start site region 52569
Tssr48000 5 112344700 to 112344738 38 + TSS region transcription start site region 48000
Gm6583 5 112353801 to 112356033 2232 - protein coding gene predicted gene 6583
Gm43759 5 112367212 to 112368472 1260 + unclassified gene predicted gene 43759
Cpgi16262 5 112370055 to 112370227 172 CpG island CpG island 16262
Cpgi16263 5 112370486 to 112370736 250 CpG island CpG island 16263
Gm43758 5 112372585 to 112372951 366 - unclassified gene predicted gene 43758
Gm20636 5 112374369 to 112375234 865 - antisense lncRNA gene predicted gene 20636
Gm42158 5 112378415 to 112383911 5496 - lncRNA gene predicted gene, 42158
Asphd2 5 112384354 to 112394866 10512 - protein coding gene aspartate beta-hydroxylase domain containing 2
Cpgi16264 5 112391744 to 112391926 182 CpG island CpG island 16264
Cpgi16265 5 112394229 to 112395510 1281 CpG island CpG island 16265
Tssr52570 5 112394813 to 112394832 19 - TSS region transcription start site region 52570
Tssr52571 5 112394836 to 112394880 44 - TSS region transcription start site region 52571
Sez6l 5 112419151 to 112577185 158034 - protein coding gene seizure related 6 homolog like
Cpgi16266 5 112419655 to 112419826 171 CpG island CpG island 16266
Tssr52572 5 112419974 to 112419980 6 - TSS region transcription start site region 52572
Cpgi16267 5 112428890 to 112429268 378 CpG island CpG island 16267
Tssr48001 5 112449405 to 112449414 9 + TSS region transcription start site region 48001
Gm6588 5 112449426 to 112451738 2312 + protein coding gene predicted gene 6588
Cpgi16268 5 112475021 to 112475452 431 CpG island CpG island 16268
Tssr52573 5 112475775 to 112475780 5 - TSS region transcription start site region 52573
Tssr52574 5 112475866 to 112475875 9 - TSS region transcription start site region 52574
Tssr48002 5 112476353 to 112476399 46 + TSS region transcription start site region 48002
Gm42160 5 112476850 to 112479355 2505 + lncRNA gene predicted gene, 42160