Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:112265335-113016635

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdmsc2 5 107413140 to 112286920 4873780 QTL modifier of muscularity 2
Crybb1 5 112255815 to 112269585 13770 + protein coding gene crystallin, beta B1
Tssr52559 5 112267353 to 112267362 9 - TSS region transcription start site region 52559
Tssr52560 5 112267388 to 112267401 13 - TSS region transcription start site region 52560
Tssr47978 5 112267518 to 112267525 7 + TSS region transcription start site region 47978
Tssr47979 5 112267544 to 112267557 13 + TSS region transcription start site region 47979
Cpgi16256 5 112269272 to 112269533 261 CpG island CpG island 16256
Tssr47980 5 112269310 to 112269318 8 + TSS region transcription start site region 47980
Tssr47981 5 112269457 to 112269464 7 + TSS region transcription start site region 47981
Tssr47982 5 112269474 to 112269482 8 + TSS region transcription start site region 47982
Tssr52561 5 112269485 to 112269517 32 - TSS region transcription start site region 52561
Tssr47983 5 112269488 to 112269496 8 + TSS region transcription start site region 47983
Tssr47984 5 112269497 to 112269506 9 + TSS region transcription start site region 47984
Tssr47985 5 112269508 to 112269545 37 + TSS region transcription start site region 47985
Tssr52562 5 112269529 to 112269551 22 - TSS region transcription start site region 52562
Gm46941 5 112270721 to 112271452 731 - lncRNA gene predicted gene, 46941
Cpgi16257 5 112271185 to 112271475 290 CpG island CpG island 16257
Tssr52563 5 112273765 to 112273788 23 - TSS region transcription start site region 52563
Cpgi16258 5 112275821 to 112277295 1474 CpG island CpG island 16258
Tssr52564 5 112276356 to 112276368 12 - TSS region transcription start site region 52564
Tssr52565 5 112276370 to 112276382 12 - TSS region transcription start site region 52565
Tssr47986 5 112276683 to 112276693 10 + TSS region transcription start site region 47986
Tpst2 5 112276691 to 112315361 38670 + protein coding gene protein-tyrosine sulfotransferase 2
Tssr47987 5 112276694 to 112276756 62 + TSS region transcription start site region 47987
Tssr47988 5 112276759 to 112276770 11 + TSS region transcription start site region 47988
Tssr47989 5 112277456 to 112277481 25 + TSS region transcription start site region 47989
D5Mit94 5 112277681 to 112277806 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 94
D5Mit94.1 5 112277778 to 112277897 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 94.1
Tssr47990 5 112286122 to 112286141 19 + TSS region transcription start site region 47990
Egrd1 5 112286714 to 112286920 206 QTL early growth rate, direct effect 1
D5Mit26 5 112286714 to 112286920 206 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 26
Tssr47991 5 112288734 to 112288768 34 + TSS region transcription start site region 47991
Tssr1593 5 112292111 to 112292114 3 + TSS region transcription start site region 1593
Tssr1594 5 112292176 to 112292183 7 + TSS region transcription start site region 1594
Tssr1595 5 112292197 to 112292200 3 + TSS region transcription start site region 1595
Tssr47992 5 112292225 to 112292261 36 + TSS region transcription start site region 47992
Tssr47993 5 112292303 to 112292308 5 + TSS region transcription start site region 47993
Tssr47994 5 112309820 to 112309863 43 + TSS region transcription start site region 47994
Dipa1 5 112317683 to 112317856 173 QTL drug induced psychomotor activation 1
D5Mit24 5 112317683 to 112317856 173 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 24
Lith17 5 112317683 to 112317856 173 QTL lithogenic gene 17
Ahl19 5 112317683 to 112317856 173 QTL age related hearing loss, early onset 19
Lmb2 5 112317856 to 37424144 -74893712 QTL lupus in MRL and B6 F2 cross, QTL 2
Bbaa3 5 112317856 to 99307426 -13010430 QTL B.burgdorferi-associated arthritis 3
Cpgi16259 5 112324680 to 112324939 259 CpG island CpG island 16259
Tssr47995 5 112325440 to 112325452 12 + TSS region transcription start site region 47995
Cpgi16260 5 112326028 to 112326923 895 CpG island CpG island 16260
Tssr52566 5 112326236 to 112326267 31 - TSS region transcription start site region 52566
Tssr47996 5 112326352 to 112326426 74 + TSS region transcription start site region 47996
Tfip11 5 112326369 to 112338073 11704 + protein coding gene tuftelin interacting protein 11
Tssr47997 5 112326428 to 112326442 14 + TSS region transcription start site region 47997
Tssr47998 5 112326802 to 112326816 14 + TSS region transcription start site region 47998
Srrd 5 112337392 to 112343040 5648 - protein coding gene SRR1 domain containing
Cpgi16261 5 112342335 to 112343598 1263 CpG island CpG island 16261
Tssr52567 5 112342971 to 112342986 15 - TSS region transcription start site region 52567
Tssr52568 5 112343010 to 112343050 40 - TSS region transcription start site region 52568
Tssr47999 5 112343068 to 112343138 70 + TSS region transcription start site region 47999
Hps4 5 112343083 to 112378414 35331 + protein coding gene HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
Tssr52569 5 112343469 to 112343505 36 - TSS region transcription start site region 52569
Tssr48000 5 112344700 to 112344738 38 + TSS region transcription start site region 48000
Gm6583 5 112353801 to 112356033 2232 - protein coding gene predicted gene 6583
Gm43759 5 112367212 to 112368472 1260 + unclassified gene predicted gene 43759
Cpgi16262 5 112370055 to 112370227 172 CpG island CpG island 16262
Cpgi16263 5 112370486 to 112370736 250 CpG island CpG island 16263
Gm43758 5 112372585 to 112372951 366 - unclassified gene predicted gene 43758
Gm20636 5 112374369 to 112375234 865 - antisense lncRNA gene predicted gene 20636
Gm42158 5 112378415 to 112383911 5496 - lncRNA gene predicted gene, 42158
Asphd2 5 112384354 to 112394866 10512 - protein coding gene aspartate beta-hydroxylase domain containing 2
Cpgi16264 5 112391744 to 112391926 182 CpG island CpG island 16264
Cpgi16265 5 112394229 to 112395510 1281 CpG island CpG island 16265
Tssr52570 5 112394813 to 112394832 19 - TSS region transcription start site region 52570
Tssr52571 5 112394836 to 112394880 44 - TSS region transcription start site region 52571
Sez6l 5 112419151 to 112577185 158034 - protein coding gene seizure related 6 homolog like
Cpgi16266 5 112419655 to 112419826 171 CpG island CpG island 16266
Tssr52572 5 112419974 to 112419980 6 - TSS region transcription start site region 52572
Cpgi16267 5 112428890 to 112429268 378 CpG island CpG island 16267
Tssr48001 5 112449405 to 112449414 9 + TSS region transcription start site region 48001
Gm6588 5 112449426 to 112451738 2312 + protein coding gene predicted gene 6588
Cpgi16268 5 112475021 to 112475452 431 CpG island CpG island 16268
Tssr52573 5 112475775 to 112475780 5 - TSS region transcription start site region 52573
Tssr52574 5 112475866 to 112475875 9 - TSS region transcription start site region 52574
Tssr48002 5 112476353 to 112476399 46 + TSS region transcription start site region 48002
Gm42160 5 112476850 to 112479355 2505 + lncRNA gene predicted gene, 42160
Tssr52575 5 112522587 to 112522589 2 - TSS region transcription start site region 52575
Cpgi16269 5 112527122 to 112527292 170 CpG island CpG island 16269
Cpgi16270 5 112552810 to 112553027 217 CpG island CpG island 16270
Cpgi16271 5 112576344 to 112577782 1438 CpG island CpG island 16271
Tssr48003 5 112576435 to 112576443 8 + TSS region transcription start site region 48003
Tssr52576 5 112577149 to 112577177 28 - TSS region transcription start site region 52576
Tssr52577 5 112577186 to 112577204 18 - TSS region transcription start site region 52577
Tssr52578 5 112577906 to 112577925 19 - TSS region transcription start site region 52578
Gm27004 5 112582645 to 112583371 726 + lincRNA gene predicted gene, 27004
1700034G24Rik 5 112582936 to 112589996 7060 - lincRNA gene RIKEN cDNA 1700034G24 gene
Tssr52579 5 112589990 to 112590002 12 - TSS region transcription start site region 52579
Tssr52580 5 112590007 to 112590015 8 - TSS region transcription start site region 52580
Tssr52581 5 112590017 to 112590022 5 - TSS region transcription start site region 52581
Cpgi16272 5 112625434 to 112626079 645 CpG island CpG island 16272
4933415J04Rik 5 112640335 to 112641635 1300 + unclassified gene RIKEN cDNA 4933415J04 gene
Cpgi16273 5 112640772 to 112641515 743 CpG island CpG island 16273
Gm30529 5 112643830 to 112680538 36708 + lncRNA gene predicted gene, 30529
Gm42864 5 112649367 to 112652112 2745 + lincRNA gene predicted gene 42864
Gm42865 5 112675375 to 112680587 5212 + lincRNA gene predicted gene 42865
Myo18b 5 112688876 to 112896362 207486 - protein coding gene myosin XVIIIb
Cpgi16274 5 112692626 to 112692780 154 CpG island CpG island 16274
Mdq12 5 112763278 to 112763278 0 QTL mammary ductal QTL 12
Tssr52582 5 112765909 to 112765947 38 - TSS region transcription start site region 52582
Tssr52583 5 112766969 to 112766980 11 - TSS region transcription start site region 52583
Tssr52584 5 112767292 to 112767315 23 - TSS region transcription start site region 52584
Tssr52585 5 112767318 to 112767329 11 - TSS region transcription start site region 52585
Tssr52586 5 112767335 to 112767347 12 - TSS region transcription start site region 52586
Tssr52587 5 112771200 to 112771219 19 - TSS region transcription start site region 52587
D5Mit366 5 112787937 to 112788111 174 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 366
Tssr52588 5 112790703 to 112790713 10 - TSS region transcription start site region 52588
Tssr52589 5 112790714 to 112790732 18 - TSS region transcription start site region 52589
Tssr48004 5 112793256 to 112793265 9 + TSS region transcription start site region 48004
Tssr48005 5 112793277 to 112793297 20 + TSS region transcription start site region 48005
1700095B10Rik 5 112793292 to 112801701 8409 + antisense lncRNA gene RIKEN cDNA 1700095B10 gene
Tssr48006 5 112793331 to 112793338 7 + TSS region transcription start site region 48006
Tssr1596 5 112840465 to 112840469 4 + TSS region transcription start site region 1596
Cpgi16275 5 112848077 to 112848231 154 CpG island CpG island 16275
Tssr48007 5 112878043 to 112878047 4 + TSS region transcription start site region 48007
Tssr52590 5 112896350 to 112896405 55 - TSS region transcription start site region 52590
Tssr52591 5 112896413 to 112896424 11 - TSS region transcription start site region 52591
Grk3 5 112910482 to 113015791 105309 - protein coding gene G protein-coupled receptor kinase 3
Tssr52592 5 112966392 to 112966397 5 - TSS region transcription start site region 52592
Cpgi16276 5 113014929 to 113016091 1162 CpG island CpG island 16276
Tssr52593 5 113015473 to 113015567 94 - TSS region transcription start site region 52593