Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:111741185-112801475

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195 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mdmsc2 5 107413140 to 112286920 4873780 QTL modifier of muscularity 2
E130006D01Rik 5 111734284 to 111761725 27441 - lincRNA gene RIKEN cDNA E130006D01 gene
Gm16019 5 111742849 to 111748176 5327 + lincRNA gene predicted gene 16019
Tssr52543 5 111761697 to 111761727 30 - TSS region transcription start site region 52543
Tssr47948 5 111793361 to 111793404 43 + TSS region transcription start site region 47948
Gm36535 5 111793367 to 111807299 13932 + lincRNA gene predicted gene, 36535
D5Mit117 5 111832983 to 111833310 327 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 117
Gm29935 5 111892863 to 111898829 5966 + lncRNA gene predicted gene, 29935
Cpgi16248 5 111894175 to 111894385 210 CpG island CpG island 16248
Gm36794 5 111895269 to 111947447 52178 - lncRNA gene predicted gene, 36794
D5Mit177 5 111899475 to 111899583 108 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 177
Gm36880 5 111910673 to 111919555 8882 + lncRNA gene predicted gene, 36880
Gm42488 5 111939804 to 111944235 4431 - lincRNA gene predicted gene 42488
Gm42156 5 111944434 to 111947531 3097 + lncRNA gene predicted gene, 42156
Cpgi16249 5 111957684 to 111958359 675 CpG island CpG island 16249
Cpgi16250 5 112002242 to 112002473 231 CpG island CpG island 16250
Chab7 5 112085348 to 112085464 116 QTL cholesterol absorption 7
D5Mit317 5 112085348 to 112085464 116 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 317
Gm30032 5 112104845 to 112120913 16068 - lncRNA gene predicted gene, 30032
Tssr52544 5 112120887 to 112120915 28 - TSS region transcription start site region 52544
Tssr52545 5 112121068 to 112121069 1 - TSS region transcription start site region 52545
Cpgi16251 5 112153653 to 112154303 650 CpG island CpG island 16251
Tssr47949 5 112156222 to 112156231 9 + TSS region transcription start site region 47949
Tssr47950 5 112156233 to 112156240 7 + TSS region transcription start site region 47950
1700016B01Rik 5 112156237 to 112165244 9007 + lincRNA gene RIKEN cDNA 1700016B01 gene
Tssr47951 5 112195496 to 112195499 3 + TSS region transcription start site region 47951
Tssr47952 5 112206758 to 112206781 23 + TSS region transcription start site region 47952
1700028D13Rik 5 112206763 to 112210002 3239 + lincRNA gene RIKEN cDNA 1700028D13 gene
Tssr47953 5 112206786 to 112206793 7 + TSS region transcription start site region 47953
Miat 5 112213228 to 112228948 15720 - lincRNA gene myocardial infarction associated transcript (non-protein coding)
Cpgi16252 5 112214474 to 112214686 212 CpG island CpG island 16252
Gm26953 5 112215461 to 112233720 18259 + lincRNA gene predicted gene, 26953
Gm27998 5 112215507 to 112215867 360 - unclassified non-coding RNA gene predicted gene, 27998
Gm27882 5 112216740 to 112216813 73 - unclassified non-coding RNA gene predicted gene, 27882
Cpgi16253 5 112217044 to 112217200 156 CpG island CpG island 16253
Gm27627 5 112217318 to 112217467 149 - unclassified non-coding RNA gene predicted gene, 27627
Cpgi16254 5 112227351 to 112227883 532 CpG island CpG island 16254
Cpgi16255 5 112228093 to 112229254 1161 CpG island CpG island 16255
Gm27357 5 112228608 to 112228742 134 - unclassified non-coding RNA gene predicted gene, 27357
Tssr52546 5 112228633 to 112228680 47 - TSS region transcription start site region 52546
Tssr52547 5 112228769 to 112228810 41 - TSS region transcription start site region 52547
Tssr52548 5 112228900 to 112228926 26 - TSS region transcription start site region 52548
Tssr52549 5 112228934 to 112228975 41 - TSS region transcription start site region 52549
Tssr52550 5 112229067 to 112229087 20 - TSS region transcription start site region 52550
Cryba4 5 112246493 to 112252518 6025 - protein coding gene crystallin, beta A4
Tssr52551 5 112246536 to 112246554 18 - TSS region transcription start site region 52551
Tssr52552 5 112249324 to 112249340 16 - TSS region transcription start site region 52552
Tssr52553 5 112251137 to 112251177 40 - TSS region transcription start site region 52553
Tssr52554 5 112251186 to 112251205 19 - TSS region transcription start site region 52554
Tssr52555 5 112251208 to 112251219 11 - TSS region transcription start site region 52555
Tssr52556 5 112251221 to 112251237 16 - TSS region transcription start site region 52556
Tssr52557 5 112252450 to 112252463 13 - TSS region transcription start site region 52557
Tssr52558 5 112252513 to 112252525 12 - TSS region transcription start site region 52558
Tssr47954 5 112255813 to 112255827 14 + TSS region transcription start site region 47954
Crybb1 5 112255815 to 112269585 13770 + protein coding gene crystallin, beta B1
Tssr47955 5 112257463 to 112257474 11 + TSS region transcription start site region 47955
Tssr1592 5 112257480 to 112257490 10 + TSS region transcription start site region 1592
Tssr47956 5 112257569 to 112257582 13 + TSS region transcription start site region 47956
Tssr47957 5 112259306 to 112259317 11 + TSS region transcription start site region 47957
Tssr47958 5 112259322 to 112259337 15 + TSS region transcription start site region 47958
Tssr47959 5 112259481 to 112259499 18 + TSS region transcription start site region 47959
Tssr47960 5 112259625 to 112259659 34 + TSS region transcription start site region 47960
Tssr47961 5 112261585 to 112261596 11 + TSS region transcription start site region 47961
Tssr47962 5 112261616 to 112261636 20 + TSS region transcription start site region 47962
Tssr47963 5 112261642 to 112261653 11 + TSS region transcription start site region 47963
Tssr47964 5 112261673 to 112261681 8 + TSS region transcription start site region 47964
Tssr47965 5 112261682 to 112261690 8 + TSS region transcription start site region 47965
Tssr47966 5 112261709 to 112261721 12 + TSS region transcription start site region 47966
Tssr47967 5 112261724 to 112261735 11 + TSS region transcription start site region 47967
Tssr47968 5 112261741 to 112261746 5 + TSS region transcription start site region 47968
Tssr47969 5 112261791 to 112261800 9 + TSS region transcription start site region 47969
Tssr47970 5 112261802 to 112261853 51 + TSS region transcription start site region 47970
Tssr47971 5 112261882 to 112261893 11 + TSS region transcription start site region 47971
Tssr47972 5 112261898 to 112261907 9 + TSS region transcription start site region 47972
Tssr47973 5 112261943 to 112261974 31 + TSS region transcription start site region 47973
Tssr47974 5 112261982 to 112262023 41 + TSS region transcription start site region 47974
Tssr47975 5 112262027 to 112262046 19 + TSS region transcription start site region 47975
Tssr47976 5 112263515 to 112263526 11 + TSS region transcription start site region 47976
Tssr47977 5 112263560 to 112263575 15 + TSS region transcription start site region 47977
Tssr52559 5 112267353 to 112267362 9 - TSS region transcription start site region 52559
Tssr52560 5 112267388 to 112267401 13 - TSS region transcription start site region 52560
Tssr47978 5 112267518 to 112267525 7 + TSS region transcription start site region 47978
Tssr47979 5 112267544 to 112267557 13 + TSS region transcription start site region 47979
Cpgi16256 5 112269272 to 112269533 261 CpG island CpG island 16256
Tssr47980 5 112269310 to 112269318 8 + TSS region transcription start site region 47980
Tssr47981 5 112269457 to 112269464 7 + TSS region transcription start site region 47981
Tssr47982 5 112269474 to 112269482 8 + TSS region transcription start site region 47982
Tssr52561 5 112269485 to 112269517 32 - TSS region transcription start site region 52561
Tssr47983 5 112269488 to 112269496 8 + TSS region transcription start site region 47983
Tssr47984 5 112269497 to 112269506 9 + TSS region transcription start site region 47984
Tssr47985 5 112269508 to 112269545 37 + TSS region transcription start site region 47985
Tssr52562 5 112269529 to 112269551 22 - TSS region transcription start site region 52562
Gm46941 5 112270721 to 112271452 731 - lncRNA gene predicted gene, 46941
Cpgi16257 5 112271185 to 112271475 290 CpG island CpG island 16257
Tssr52563 5 112273765 to 112273788 23 - TSS region transcription start site region 52563
Cpgi16258 5 112275821 to 112277295 1474 CpG island CpG island 16258
Tssr52564 5 112276356 to 112276368 12 - TSS region transcription start site region 52564
Tssr52565 5 112276370 to 112276382 12 - TSS region transcription start site region 52565
Tssr47986 5 112276683 to 112276693 10 + TSS region transcription start site region 47986
Tpst2 5 112276691 to 112315361 38670 + protein coding gene protein-tyrosine sulfotransferase 2
Tssr47987 5 112276694 to 112276756 62 + TSS region transcription start site region 47987
Tssr47988 5 112276759 to 112276770 11 + TSS region transcription start site region 47988
Tssr47989 5 112277456 to 112277481 25 + TSS region transcription start site region 47989
D5Mit94 5 112277681 to 112277806 125 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 94
D5Mit94.1 5 112277778 to 112277897 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 94.1
Tssr47990 5 112286122 to 112286141 19 + TSS region transcription start site region 47990
Egrd1 5 112286714 to 112286920 206 QTL early growth rate, direct effect 1
D5Mit26 5 112286714 to 112286920 206 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 26
Tssr47991 5 112288734 to 112288768 34 + TSS region transcription start site region 47991
Tssr1593 5 112292111 to 112292114 3 + TSS region transcription start site region 1593
Tssr1594 5 112292176 to 112292183 7 + TSS region transcription start site region 1594
Tssr1595 5 112292197 to 112292200 3 + TSS region transcription start site region 1595
Tssr47992 5 112292225 to 112292261 36 + TSS region transcription start site region 47992
Tssr47993 5 112292303 to 112292308 5 + TSS region transcription start site region 47993
Tssr47994 5 112309820 to 112309863 43 + TSS region transcription start site region 47994
Lith17 5 112317683 to 112317856 173 QTL lithogenic gene 17
Ahl19 5 112317683 to 112317856 173 QTL age related hearing loss, early onset 19
D5Mit24 5 112317683 to 112317856 173 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 24
Dipa1 5 112317683 to 112317856 173 QTL drug induced psychomotor activation 1
Bbaa3 5 112317856 to 99307426 -13010430 QTL B.burgdorferi-associated arthritis 3
Lmb2 5 112317856 to 37424144 -74893712 QTL lupus in MRL and B6 F2 cross, QTL 2
Cpgi16259 5 112324680 to 112324939 259 CpG island CpG island 16259
Tssr47995 5 112325440 to 112325452 12 + TSS region transcription start site region 47995
Cpgi16260 5 112326028 to 112326923 895 CpG island CpG island 16260
Tssr52566 5 112326236 to 112326267 31 - TSS region transcription start site region 52566
Tssr47996 5 112326352 to 112326426 74 + TSS region transcription start site region 47996
Tfip11 5 112326369 to 112338073 11704 + protein coding gene tuftelin interacting protein 11
Tssr47997 5 112326428 to 112326442 14 + TSS region transcription start site region 47997
Tssr47998 5 112326802 to 112326816 14 + TSS region transcription start site region 47998
Srrd 5 112337392 to 112343040 5648 - protein coding gene SRR1 domain containing
Cpgi16261 5 112342335 to 112343598 1263 CpG island CpG island 16261
Tssr52567 5 112342971 to 112342986 15 - TSS region transcription start site region 52567
Tssr52568 5 112343010 to 112343050 40 - TSS region transcription start site region 52568
Tssr47999 5 112343068 to 112343138 70 + TSS region transcription start site region 47999
Hps4 5 112343083 to 112378414 35331 + protein coding gene HPS4, biogenesis of lysosomal organelles complex 3 subunit 2
Tssr52569 5 112343469 to 112343505 36 - TSS region transcription start site region 52569
Tssr48000 5 112344700 to 112344738 38 + TSS region transcription start site region 48000
Gm6583 5 112353801 to 112356033 2232 - protein coding gene predicted gene 6583
Gm43759 5 112367212 to 112368472 1260 + unclassified gene predicted gene 43759
Cpgi16262 5 112370055 to 112370227 172 CpG island CpG island 16262
Cpgi16263 5 112370486 to 112370736 250 CpG island CpG island 16263
Gm43758 5 112372585 to 112372951 366 - unclassified gene predicted gene 43758
Gm20636 5 112374369 to 112375234 865 - antisense lncRNA gene predicted gene 20636
Gm42158 5 112378415 to 112383911 5496 - lncRNA gene predicted gene, 42158
Asphd2 5 112384354 to 112394866 10512 - protein coding gene aspartate beta-hydroxylase domain containing 2
Cpgi16264 5 112391744 to 112391926 182 CpG island CpG island 16264
Cpgi16265 5 112394229 to 112395510 1281 CpG island CpG island 16265
Tssr52570 5 112394813 to 112394832 19 - TSS region transcription start site region 52570
Tssr52571 5 112394836 to 112394880 44 - TSS region transcription start site region 52571
Sez6l 5 112419151 to 112577185 158034 - protein coding gene seizure related 6 homolog like
Cpgi16266 5 112419655 to 112419826 171 CpG island CpG island 16266
Tssr52572 5 112419974 to 112419980 6 - TSS region transcription start site region 52572
Cpgi16267 5 112428890 to 112429268 378 CpG island CpG island 16267
Tssr48001 5 112449405 to 112449414 9 + TSS region transcription start site region 48001
Gm6588 5 112449426 to 112451738 2312 + protein coding gene predicted gene 6588
Cpgi16268 5 112475021 to 112475452 431 CpG island CpG island 16268
Tssr52573 5 112475775 to 112475780 5 - TSS region transcription start site region 52573
Tssr52574 5 112475866 to 112475875 9 - TSS region transcription start site region 52574
Tssr48002 5 112476353 to 112476399 46 + TSS region transcription start site region 48002
Gm42160 5 112476850 to 112479355 2505 + lncRNA gene predicted gene, 42160
Tssr52575 5 112522587 to 112522589 2 - TSS region transcription start site region 52575
Cpgi16269 5 112527122 to 112527292 170 CpG island CpG island 16269
Cpgi16270 5 112552810 to 112553027 217 CpG island CpG island 16270
Cpgi16271 5 112576344 to 112577782 1438 CpG island CpG island 16271
Tssr48003 5 112576435 to 112576443 8 + TSS region transcription start site region 48003
Tssr52576 5 112577149 to 112577177 28 - TSS region transcription start site region 52576
Tssr52577 5 112577186 to 112577204 18 - TSS region transcription start site region 52577
Tssr52578 5 112577906 to 112577925 19 - TSS region transcription start site region 52578
Gm27004 5 112582645 to 112583371 726 + lincRNA gene predicted gene, 27004
1700034G24Rik 5 112582936 to 112589996 7060 - lincRNA gene RIKEN cDNA 1700034G24 gene
Tssr52579 5 112589990 to 112590002 12 - TSS region transcription start site region 52579
Tssr52580 5 112590007 to 112590015 8 - TSS region transcription start site region 52580
Tssr52581 5 112590017 to 112590022 5 - TSS region transcription start site region 52581
Cpgi16272 5 112625434 to 112626079 645 CpG island CpG island 16272
4933415J04Rik 5 112640335 to 112641635 1300 + unclassified gene RIKEN cDNA 4933415J04 gene
Cpgi16273 5 112640772 to 112641515 743 CpG island CpG island 16273
Gm30529 5 112643830 to 112680538 36708 + lncRNA gene predicted gene, 30529
Gm42864 5 112649367 to 112652112 2745 + lincRNA gene predicted gene 42864
Gm42865 5 112675375 to 112680587 5212 + lincRNA gene predicted gene 42865
Myo18b 5 112688876 to 112896362 207486 - protein coding gene myosin XVIIIb
Cpgi16274 5 112692626 to 112692780 154 CpG island CpG island 16274
Mdq12 5 112763278 to 112763278 0 QTL mammary ductal QTL 12
Tssr52582 5 112765909 to 112765947 38 - TSS region transcription start site region 52582
Tssr52583 5 112766969 to 112766980 11 - TSS region transcription start site region 52583
Tssr52584 5 112767292 to 112767315 23 - TSS region transcription start site region 52584
Tssr52585 5 112767318 to 112767329 11 - TSS region transcription start site region 52585
Tssr52586 5 112767335 to 112767347 12 - TSS region transcription start site region 52586
Tssr52587 5 112771200 to 112771219 19 - TSS region transcription start site region 52587
D5Mit366 5 112787937 to 112788111 174 DNA segment DNA Segment, Chr 5, Massachusetts Institute of Technology 366
Tssr52588 5 112790703 to 112790713 10 - TSS region transcription start site region 52588
Tssr52589 5 112790714 to 112790732 18 - TSS region transcription start site region 52589
Tssr48004 5 112793256 to 112793265 9 + TSS region transcription start site region 48004
Tssr48005 5 112793277 to 112793297 20 + TSS region transcription start site region 48005
1700095B10Rik 5 112793292 to 112801701 8409 + antisense lncRNA gene RIKEN cDNA 1700095B10 gene
Tssr48006 5 112793331 to 112793338 7 + TSS region transcription start site region 48006