Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:11162108-12008779

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34 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm32554 5 11165537 to 11181825 16288 - lincRNA gene predicted gene, 32554
Tssr50121 5 11177432 to 11177436 4 - TSS region transcription start site region 50121
Gm5861 5 11183072 to 11187810 4738 + protein coding gene predicted gene 5861
Gm4047 5 11190194 to 11222014 31820 lncRNA gene predicted gene 4047
Gm29743 5 11192475 to 11193593 1118 + pseudogene predicted gene, 29743
Gm33093 5 11238536 to 11254753 16217 - lincRNA gene predicted gene, 33093
Gm8890 5 11256033 to 11260494 4461 + protein coding gene predicted gene 8890
Gm8891 5 11265590 to 11266421 831 + pseudogene predicted gene 8891
Gm32877 5 11320804 to 11340297 19493 - lincRNA gene predicted gene, 32877
Speer1 5 11341516 to 11346286 4770 + protein coding gene spermatogenesis associated glutamate (E)-rich protein 1
Gm8896 5 11351104 to 11352209 1105 + pseudogene predicted gene 8896
1700108N06Rik 5 11400212 to 11415204 14992 - lincRNA gene RIKEN cDNA 1700108N06 gene
Gm8897 5 11416418 to 11421235 4817 + protein coding gene predicted gene 8897
Gm29745 5 11426453 to 11427139 686 + pseudogene predicted gene, 29745
Gm43540 5 11460424 to 11464271 3847 + pseudogene predicted gene 43540
4930437M23Rik 5 11485335 to 11501452 16117 - lincRNA gene RIKEN cDNA 4930437M23 gene
Gm8906 5 11502685 to 11507417 4732 + protein coding gene predicted gene 8906
Gm21040 5 11512247 to 11513355 1108 + pseudogene predicted gene, 21040
Gm43640 5 11577108 to 11593779 16671 - lincRNA gene predicted gene 43640
Gm6460 5 11594956 to 11599480 4524 + protein coding gene predicted gene 6460
Gm8920 5 11604671 to 11605594 923 + pseudogene predicted gene 8920
Gm33847 5 11664167 to 11680740 16573 - lincRNA gene predicted gene, 33847
Gm8922 5 11681959 to 11686856 4897 + protein coding gene predicted gene 8922
Gm8924 5 11691659 to 11692790 1131 + pseudogene predicted gene 8924
1700003C15Rik 5 11749833 to 11769308 19475 - lincRNA gene RIKEN cDNA 1700003C15 gene
Gm8926 5 11770548 to 11775300 4752 + protein coding gene predicted gene 8926
Gm8929 5 11780123 to 11781228 1105 + pseudogene predicted gene 8929
Gm43132 5 11828046 to 11844359 16313 - lincRNA gene predicted gene 43132
Gm6465 5 11845539 to 11850352 4813 + protein coding gene predicted gene 6465
Gm29755 5 11855234 to 11856181 947 + pseudogene predicted gene, 29755
Gm34493 5 11894629 to 11898228 3599 - lncRNA gene predicted gene, 34493
Gm43131 5 11900483 to 11916836 16353 - lincRNA gene predicted gene 43131
4933402N22Rik 5 11918043 to 11922804 4761 + protein coding gene RIKEN cDNA 4933402N22 gene
Gm5288 5 11927622 to 11928718 1096 + pseudogene predicted gene 5288