Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:111472737-111946541

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm42154 5 111470741 to 111474215 3474 - lncRNA gene predicted gene, 42154
Gm36149 5 111490881 to 111492624 1743 + lncRNA gene predicted gene, 36149
Tssr47947 5 111490921 to 111490958 37 + TSS region transcription start site region 47947
Gm36223 5 111509276 to 111512271 2995 + lncRNA gene predicted gene, 36223
Cpgi16247 5 111509353 to 111509813 460 CpG island CpG island 16247
Tssr1590 5 111509384 to 111509397 13 + TSS region transcription start site region 1590
Gm36274 5 111557220 to 111562132 4912 - lncRNA gene predicted gene, 36274
C130026L21Rik 5 111581561 to 111587153 5592 + lincRNA gene RIKEN cDNA C130026L21 gene
Gm42489 5 111593616 to 111594284 668 + lincRNA gene predicted gene 42489
Tssr52542 5 111594240 to 111594249 9 - TSS region transcription start site region 52542
Tssr1591 5 111630459 to 111630460 1 + TSS region transcription start site region 1591
Gm36386 5 111658694 to 111663487 4793 - lncRNA gene predicted gene, 36386
Gm36434 5 111663828 to 111666738 2910 + lncRNA gene predicted gene, 36434
Gm36481 5 111707737 to 111711541 3804 + lncRNA gene predicted gene, 36481
Gm26897 5 111733924 to 111734574 650 + protein coding gene predicted gene, 26897
E130006D01Rik 5 111734284 to 111761725 27441 - lincRNA gene RIKEN cDNA E130006D01 gene
Gm16019 5 111742849 to 111748176 5327 + lincRNA gene predicted gene 16019
Tssr52543 5 111761697 to 111761727 30 - TSS region transcription start site region 52543
Tssr47948 5 111793361 to 111793404 43 + TSS region transcription start site region 47948
Gm36535 5 111793367 to 111807299 13932 + lincRNA gene predicted gene, 36535
D5Mit117 5 111832983 to 111833310 327 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 117
Gm29935 5 111892863 to 111898829 5966 + lncRNA gene predicted gene, 29935
Cpgi16248 5 111894175 to 111894385 210 CpG island CpG island 16248
Gm36794 5 111895269 to 111947447 52178 - lncRNA gene predicted gene, 36794
D5Mit177 5 111899475 to 111899583 108 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 177
Gm36880 5 111910673 to 111919555 8882 + lncRNA gene predicted gene, 36880
Gm42488 5 111939804 to 111944235 4431 - lincRNA gene predicted gene 42488
Gm42156 5 111944434 to 111947531 3097 + lncRNA gene predicted gene, 42156