Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:111419240-111769249

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29 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi16244 5 111416190 to 111421745 5555 CpG island CpG island 16244
Mn1 5 111418166 to 111457025 38859 + protein coding gene meningioma 1
Tssr47943 5 111420160 to 111420188 28 + TSS region transcription start site region 47943
Tssr47944 5 111420249 to 111420260 11 + TSS region transcription start site region 47944
Gm43119 5 111423589 to 111425710 2121 + unclassified gene predicted gene 43119
D5Dcr54 5 111429038 to 111429134 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 54
Tssr47945 5 111429217 to 111429267 50 + TSS region transcription start site region 47945
Cpgi16245 5 111432080 to 111432405 325 CpG island CpG island 16245
Cpgi16246 5 111434179 to 111434444 265 CpG island CpG island 16246
Tssr47946 5 111454914 to 111454918 4 + TSS region transcription start site region 47946
Gm42155 5 111468194 to 111470848 2654 + lncRNA gene predicted gene, 42155
Gm42154 5 111470741 to 111474215 3474 - lncRNA gene predicted gene, 42154
Gm36149 5 111490881 to 111492624 1743 + lncRNA gene predicted gene, 36149
Tssr47947 5 111490921 to 111490958 37 + TSS region transcription start site region 47947
Gm36223 5 111509276 to 111512271 2995 + lncRNA gene predicted gene, 36223
Cpgi16247 5 111509353 to 111509813 460 CpG island CpG island 16247
Tssr1590 5 111509384 to 111509397 13 + TSS region transcription start site region 1590
Gm36274 5 111557220 to 111562132 4912 - lncRNA gene predicted gene, 36274
C130026L21Rik 5 111581561 to 111587153 5592 + lincRNA gene RIKEN cDNA C130026L21 gene
Gm42489 5 111593616 to 111594284 668 + lincRNA gene predicted gene 42489
Tssr52542 5 111594240 to 111594249 9 - TSS region transcription start site region 52542
Tssr1591 5 111630459 to 111630460 1 + TSS region transcription start site region 1591
Gm36386 5 111658694 to 111663487 4793 - lncRNA gene predicted gene, 36386
Gm36434 5 111663828 to 111666738 2910 + lncRNA gene predicted gene, 36434
Gm36481 5 111707737 to 111711541 3804 + lncRNA gene predicted gene, 36481
Gm26897 5 111733924 to 111734574 650 + protein coding gene predicted gene, 26897
E130006D01Rik 5 111734284 to 111761725 27441 - lincRNA gene RIKEN cDNA E130006D01 gene
Gm16019 5 111742849 to 111748176 5327 + lincRNA gene predicted gene 16019
Tssr52543 5 111761697 to 111761727 30 - TSS region transcription start site region 52543