Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:111233589-111615710

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttc28 5 110879803 to 111289780 409977 + protein coding gene tetratricopeptide repeat domain 28
Tssr52539 5 111234692 to 111234699 7 - TSS region transcription start site region 52539
Tssr47929 5 111235352 to 111235374 22 + TSS region transcription start site region 47929
Gm27602 5 111274984 to 111275094 110 - unclassified non-coding RNA gene predicted gene, 27602
Tssr47930 5 111287365 to 111287376 11 + TSS region transcription start site region 47930
Tssr47931 5 111289203 to 111289214 11 + TSS region transcription start site region 47931
Cpgi16243 5 111330273 to 111331338 1065 CpG island CpG island 16243
Gm27680 5 111330473 to 111330632 159 - unclassified non-coding RNA gene predicted gene, 27680
Tssr47932 5 111330742 to 111330768 26 + TSS region transcription start site region 47932
Pitpnb 5 111330763 to 111388359 57596 + protein coding gene phosphatidylinositol transfer protein, beta
Gm36027 5 111357620 to 111363480 5860 + lncRNA gene predicted gene, 36027
Tssr1589 5 111380208 to 111380231 23 + TSS region transcription start site region 1589
Gm43118 5 111387515 to 111388289 774 - antisense lncRNA gene predicted gene 43118
Gm10405 5 111392059 to 111395732 3673 unclassified gene predicted gene 10405
Cpgi16244 5 111416190 to 111421745 5555 CpG island CpG island 16244
Tssr47933 5 111416609 to 111416619 10 + TSS region transcription start site region 47933
Tssr52540 5 111417125 to 111417138 13 - TSS region transcription start site region 52540
Tssr52541 5 111417140 to 111417159 19 - TSS region transcription start site region 52541
Tssr47934 5 111417263 to 111417306 43 + TSS region transcription start site region 47934
Tssr47935 5 111417317 to 111417319 2 + TSS region transcription start site region 47935
Tssr47936 5 111417759 to 111417770 11 + TSS region transcription start site region 47936
Mn1 5 111418166 to 111457025 38859 + protein coding gene meningioma 1
Tssr47937 5 111418186 to 111418203 17 + TSS region transcription start site region 47937
Tssr47938 5 111418221 to 111418233 12 + TSS region transcription start site region 47938
Tssr47939 5 111418253 to 111418268 15 + TSS region transcription start site region 47939
Tssr47940 5 111418651 to 111418662 11 + TSS region transcription start site region 47940
Tssr47941 5 111418708 to 111418715 7 + TSS region transcription start site region 47941
Tssr47942 5 111419014 to 111419061 47 + TSS region transcription start site region 47942
Tssr47943 5 111420160 to 111420188 28 + TSS region transcription start site region 47943
Tssr47944 5 111420249 to 111420260 11 + TSS region transcription start site region 47944
Gm43119 5 111423589 to 111425710 2121 + unclassified gene predicted gene 43119
D5Dcr54 5 111429038 to 111429134 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 54
Tssr47945 5 111429217 to 111429267 50 + TSS region transcription start site region 47945
Cpgi16245 5 111432080 to 111432405 325 CpG island CpG island 16245
Cpgi16246 5 111434179 to 111434444 265 CpG island CpG island 16246
Tssr47946 5 111454914 to 111454918 4 + TSS region transcription start site region 47946
Gm42155 5 111468194 to 111470848 2654 + lncRNA gene predicted gene, 42155
Gm42154 5 111470741 to 111474215 3474 - lncRNA gene predicted gene, 42154
Gm36149 5 111490881 to 111492624 1743 + lncRNA gene predicted gene, 36149
Tssr47947 5 111490921 to 111490958 37 + TSS region transcription start site region 47947
Gm36223 5 111509276 to 111512271 2995 + lncRNA gene predicted gene, 36223
Cpgi16247 5 111509353 to 111509813 460 CpG island CpG island 16247
Tssr1590 5 111509384 to 111509397 13 + TSS region transcription start site region 1590
Gm36274 5 111557220 to 111562132 4912 - lncRNA gene predicted gene, 36274
C130026L21Rik 5 111581561 to 111587153 5592 + lincRNA gene RIKEN cDNA C130026L21 gene
Gm42489 5 111593616 to 111594284 668 + lincRNA gene predicted gene 42489
Tssr52542 5 111594240 to 111594249 9 - TSS region transcription start site region 52542