Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:110977140-111417679

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ttc28 5 110879803 to 111289780 409977 + protein coding gene tetratricopeptide repeat domain 28
Tssr47923 5 110978656 to 110978676 20 + TSS region transcription start site region 47923
Gm42778 5 110978665 to 110979217 552 + unclassified gene predicted gene 42778
Cpgi16240 5 110978972 to 110980392 1420 CpG island CpG island 16240
Tssr47924 5 110990682 to 110990685 3 + TSS region transcription start site region 47924
Mir701 5 111004144 to 111004252 108 + miRNA gene microRNA 701
Gm15988 5 111008480 to 111008846 366 - pseudogene predicted gene 15988
D5Dcr53 5 111021843 to 111021938 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 53
Gm42780 5 111028552 to 111029285 733 + unclassified gene predicted gene 42780
Cpgi16241 5 111058446 to 111058648 202 CpG island CpG island 16241
Tssr47925 5 111104808 to 111104811 3 + TSS region transcription start site region 47925
8430408J09Rik 5 111109401 to 111111122 1721 unclassified gene RIKEN cDNA 8430408J09 gene
Tssr47926 5 111116381 to 111116384 3 + TSS region transcription start site region 47926
Tssr47927 5 111124088 to 111124099 11 + TSS region transcription start site region 47927
Tssr47928 5 111139931 to 111139935 4 + TSS region transcription start site region 47928
Gm43677 5 111158311 to 111160688 2377 + unclassified gene predicted gene 43677
Tssr52538 5 111178658 to 111178670 12 - TSS region transcription start site region 52538
Gm43676 5 111197140 to 111197679 539 + unclassified gene predicted gene 43676
Cpgi16242 5 111201525 to 111201765 240 CpG island CpG island 16242
Gm35628 5 111232466 to 111233239 773 - lncRNA gene predicted gene, 35628
Tssr52539 5 111234692 to 111234699 7 - TSS region transcription start site region 52539
Tssr47929 5 111235352 to 111235374 22 + TSS region transcription start site region 47929
Gm27602 5 111274984 to 111275094 110 - unclassified non-coding RNA gene predicted gene, 27602
Tssr47930 5 111287365 to 111287376 11 + TSS region transcription start site region 47930
Tssr47931 5 111289203 to 111289214 11 + TSS region transcription start site region 47931
Cpgi16243 5 111330273 to 111331338 1065 CpG island CpG island 16243
Gm27680 5 111330473 to 111330632 159 - unclassified non-coding RNA gene predicted gene, 27680
Tssr47932 5 111330742 to 111330768 26 + TSS region transcription start site region 47932
Pitpnb 5 111330763 to 111388359 57596 + protein coding gene phosphatidylinositol transfer protein, beta
Gm36027 5 111357620 to 111363480 5860 + lncRNA gene predicted gene, 36027
Tssr1589 5 111380208 to 111380231 23 + TSS region transcription start site region 1589
Gm43118 5 111387515 to 111388289 774 - antisense lncRNA gene predicted gene 43118
Gm10405 5 111392059 to 111395732 3673 unclassified gene predicted gene 10405
Cpgi16244 5 111416190 to 111421745 5555 CpG island CpG island 16244
Tssr47933 5 111416609 to 111416619 10 + TSS region transcription start site region 47933
Tssr52540 5 111417125 to 111417138 13 - TSS region transcription start site region 52540
Tssr52541 5 111417140 to 111417159 19 - TSS region transcription start site region 52541
Tssr47934 5 111417263 to 111417306 43 + TSS region transcription start site region 47934
Tssr47935 5 111417317 to 111417319 2 + TSS region transcription start site region 47935