Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:110842059-111945732

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Chek2 5 110839979 to 110874145 34166 + protein coding gene checkpoint kinase 2
Tssr47912 5 110867886 to 110867914 28 + TSS region transcription start site region 47912
Tssr1588 5 110867930 to 110867938 8 + TSS region transcription start site region 1588
Gm42779 5 110876603 to 110877273 670 + pseudogene predicted gene 42779
Cpgi16239 5 110879388 to 110880472 1084 CpG island CpG island 16239
Tssr47913 5 110879788 to 110879842 54 + TSS region transcription start site region 47913
Ttc28 5 110879803 to 111289780 409977 + protein coding gene tetratricopeptide repeat domain 28
Tssr47914 5 110879846 to 110879887 41 + TSS region transcription start site region 47914
Tssr47915 5 110879926 to 110879941 15 + TSS region transcription start site region 47915
Tssr47916 5 110895205 to 110895241 36 + TSS region transcription start site region 47916
Tssr47917 5 110895270 to 110895304 34 + TSS region transcription start site region 47917
Tssr47918 5 110898566 to 110898571 5 + TSS region transcription start site region 47918
Gm15989 5 110905244 to 110905741 497 + pseudogene predicted gene 15989
Tssr47919 5 110906397 to 110906406 9 + TSS region transcription start site region 47919
Tssr47920 5 110906477 to 110906491 14 + TSS region transcription start site region 47920
Tssr47921 5 110906573 to 110906588 15 + TSS region transcription start site region 47921
Gm35973 5 110930102 to 110943879 13777 + lncRNA gene predicted gene, 35973
Tssr47922 5 110956078 to 110956081 3 + TSS region transcription start site region 47922
Tssr47923 5 110978656 to 110978676 20 + TSS region transcription start site region 47923
Gm42778 5 110978665 to 110979217 552 + unclassified gene predicted gene 42778
Cpgi16240 5 110978972 to 110980392 1420 CpG island CpG island 16240
Tssr47924 5 110990682 to 110990685 3 + TSS region transcription start site region 47924
Mir701 5 111004144 to 111004252 108 + miRNA gene microRNA 701
Gm15988 5 111008480 to 111008846 366 - pseudogene predicted gene 15988
D5Dcr53 5 111021843 to 111021938 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 53
Gm42780 5 111028552 to 111029285 733 + unclassified gene predicted gene 42780
Cpgi16241 5 111058446 to 111058648 202 CpG island CpG island 16241
Tssr47925 5 111104808 to 111104811 3 + TSS region transcription start site region 47925
8430408J09Rik 5 111109401 to 111111122 1721 unclassified gene RIKEN cDNA 8430408J09 gene
Tssr47926 5 111116381 to 111116384 3 + TSS region transcription start site region 47926
Tssr47927 5 111124088 to 111124099 11 + TSS region transcription start site region 47927
Tssr47928 5 111139931 to 111139935 4 + TSS region transcription start site region 47928
Gm43677 5 111158311 to 111160688 2377 + unclassified gene predicted gene 43677
Tssr52538 5 111178658 to 111178670 12 - TSS region transcription start site region 52538
Gm43676 5 111197140 to 111197679 539 + unclassified gene predicted gene 43676
Cpgi16242 5 111201525 to 111201765 240 CpG island CpG island 16242
Gm35628 5 111232466 to 111233239 773 - lncRNA gene predicted gene, 35628
Tssr52539 5 111234692 to 111234699 7 - TSS region transcription start site region 52539
Tssr47929 5 111235352 to 111235374 22 + TSS region transcription start site region 47929
Gm27602 5 111274984 to 111275094 110 - unclassified non-coding RNA gene predicted gene, 27602
Tssr47930 5 111287365 to 111287376 11 + TSS region transcription start site region 47930
Tssr47931 5 111289203 to 111289214 11 + TSS region transcription start site region 47931
Cpgi16243 5 111330273 to 111331338 1065 CpG island CpG island 16243
Gm27680 5 111330473 to 111330632 159 - unclassified non-coding RNA gene predicted gene, 27680
Tssr47932 5 111330742 to 111330768 26 + TSS region transcription start site region 47932
Pitpnb 5 111330763 to 111388359 57596 + protein coding gene phosphatidylinositol transfer protein, beta
Gm36027 5 111357620 to 111363480 5860 + lncRNA gene predicted gene, 36027
Tssr1589 5 111380208 to 111380231 23 + TSS region transcription start site region 1589
Gm43118 5 111387515 to 111388289 774 - antisense lncRNA gene predicted gene 43118
Gm10405 5 111392059 to 111395732 3673 unclassified gene predicted gene 10405
Cpgi16244 5 111416190 to 111421745 5555 CpG island CpG island 16244
Tssr47933 5 111416609 to 111416619 10 + TSS region transcription start site region 47933
Tssr52540 5 111417125 to 111417138 13 - TSS region transcription start site region 52540
Tssr52541 5 111417140 to 111417159 19 - TSS region transcription start site region 52541
Tssr47934 5 111417263 to 111417306 43 + TSS region transcription start site region 47934
Tssr47935 5 111417317 to 111417319 2 + TSS region transcription start site region 47935
Tssr47936 5 111417759 to 111417770 11 + TSS region transcription start site region 47936
Mn1 5 111418166 to 111457025 38859 + protein coding gene meningioma 1
Tssr47937 5 111418186 to 111418203 17 + TSS region transcription start site region 47937
Tssr47938 5 111418221 to 111418233 12 + TSS region transcription start site region 47938
Tssr47939 5 111418253 to 111418268 15 + TSS region transcription start site region 47939
Tssr47940 5 111418651 to 111418662 11 + TSS region transcription start site region 47940
Tssr47941 5 111418708 to 111418715 7 + TSS region transcription start site region 47941
Tssr47942 5 111419014 to 111419061 47 + TSS region transcription start site region 47942
Tssr47943 5 111420160 to 111420188 28 + TSS region transcription start site region 47943
Tssr47944 5 111420249 to 111420260 11 + TSS region transcription start site region 47944
Gm43119 5 111423589 to 111425710 2121 + unclassified gene predicted gene 43119
D5Dcr54 5 111429038 to 111429134 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 54
Tssr47945 5 111429217 to 111429267 50 + TSS region transcription start site region 47945
Cpgi16245 5 111432080 to 111432405 325 CpG island CpG island 16245
Cpgi16246 5 111434179 to 111434444 265 CpG island CpG island 16246
Tssr47946 5 111454914 to 111454918 4 + TSS region transcription start site region 47946
Gm42155 5 111468194 to 111470848 2654 + lncRNA gene predicted gene, 42155
Gm42154 5 111470741 to 111474215 3474 - lncRNA gene predicted gene, 42154
Gm36149 5 111490881 to 111492624 1743 + lncRNA gene predicted gene, 36149
Tssr47947 5 111490921 to 111490958 37 + TSS region transcription start site region 47947
Gm36223 5 111509276 to 111512271 2995 + lncRNA gene predicted gene, 36223
Cpgi16247 5 111509353 to 111509813 460 CpG island CpG island 16247
Tssr1590 5 111509384 to 111509397 13 + TSS region transcription start site region 1590
Gm36274 5 111557220 to 111562132 4912 - lncRNA gene predicted gene, 36274
C130026L21Rik 5 111581561 to 111587153 5592 + lincRNA gene RIKEN cDNA C130026L21 gene
Gm42489 5 111593616 to 111594284 668 + lincRNA gene predicted gene 42489
Tssr52542 5 111594240 to 111594249 9 - TSS region transcription start site region 52542
Tssr1591 5 111630459 to 111630460 1 + TSS region transcription start site region 1591
Gm36386 5 111658694 to 111663487 4793 - lncRNA gene predicted gene, 36386
Gm36434 5 111663828 to 111666738 2910 + lncRNA gene predicted gene, 36434
Gm36481 5 111707737 to 111711541 3804 + lncRNA gene predicted gene, 36481
Gm26897 5 111733924 to 111734574 650 + protein coding gene predicted gene, 26897
E130006D01Rik 5 111734284 to 111761725 27441 - lincRNA gene RIKEN cDNA E130006D01 gene
Gm16019 5 111742849 to 111748176 5327 + lincRNA gene predicted gene 16019
Tssr52543 5 111761697 to 111761727 30 - TSS region transcription start site region 52543
Tssr47948 5 111793361 to 111793404 43 + TSS region transcription start site region 47948
Gm36535 5 111793367 to 111807299 13932 + lincRNA gene predicted gene, 36535
D5Mit117 5 111832983 to 111833310 327 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 117
Gm29935 5 111892863 to 111898829 5966 + lncRNA gene predicted gene, 29935
Cpgi16248 5 111894175 to 111894385 210 CpG island CpG island 16248
Gm36794 5 111895269 to 111947447 52178 - lncRNA gene predicted gene, 36794
D5Mit177 5 111899475 to 111899583 108 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 177
Gm36880 5 111910673 to 111919555 8882 + lncRNA gene predicted gene, 36880
Gm42488 5 111939804 to 111944235 4431 - lincRNA gene predicted gene 42488
Gm42156 5 111944434 to 111947531 3097 + lncRNA gene predicted gene, 42156