Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:110569401-111651122

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138 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Galnt9 5 110544355 to 110621380 77025 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 9
Tssr47904 5 110594780 to 110594815 35 + TSS region transcription start site region 47904
Tssr47905 5 110597687 to 110597691 4 + TSS region transcription start site region 47905
Tssr47906 5 110603496 to 110603528 32 + TSS region transcription start site region 47906
Cpgi16233 5 110628203 to 110628456 253 CpG island CpG island 16233
Tssr47907 5 110630053 to 110630061 8 + TSS region transcription start site region 47907
Noc4l 5 110648419 to 110653382 4963 - protein coding gene NOC4 like
Cpgi16234 5 110652684 to 110654052 1368 CpG island CpG island 16234
Tssr52513 5 110653128 to 110653137 9 - TSS region transcription start site region 52513
Tssr52514 5 110653348 to 110653422 74 - TSS region transcription start site region 52514
Tssr47908 5 110653444 to 110653482 38 + TSS region transcription start site region 47908
Ddx51 5 110653451 to 110660496 7045 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
Gm42595 5 110661392 to 110662998 1606 + lincRNA gene predicted gene 42595
Ep400 5 110664373 to 110770717 106344 - protein coding gene E1A binding protein p400
Mir7026 5 110666075 to 110666141 66 - miRNA gene microRNA 7026
Gm22716 5 110677124 to 110677230 106 - snRNA gene predicted gene, 22716
Tssr52515 5 110682157 to 110682163 6 - TSS region transcription start site region 52515
Gm26079 5 110692049 to 110692181 132 - snoRNA gene predicted gene, 26079
Tssr52516 5 110729876 to 110729905 29 - TSS region transcription start site region 52516
Gm22583 5 110757085 to 110757191 106 + snRNA gene predicted gene, 22583
Tssr52517 5 110762458 to 110762461 3 - TSS region transcription start site region 52517
Cpgi16235 5 110769790 to 110771210 1420 CpG island CpG island 16235
Tssr52518 5 110770132 to 110770173 41 - TSS region transcription start site region 52518
Tssr52519 5 110770176 to 110770187 11 - TSS region transcription start site region 52519
Tssr52520 5 110770202 to 110770211 9 - TSS region transcription start site region 52520
Tssr52521 5 110770560 to 110770629 69 - TSS region transcription start site region 52521
Tssr52522 5 110770710 to 110770723 13 - TSS region transcription start site region 52522
Tssr52523 5 110770858 to 110770923 65 - TSS region transcription start site region 52523
Gm15559 5 110770888 to 110778874 7986 + antisense lncRNA gene predicted gene 15559
Tssr52524 5 110772845 to 110772847 2 - TSS region transcription start site region 52524
Pus1 5 110773667 to 110780659 6992 - protein coding gene pseudouridine synthase 1
Cpgi16236 5 110779848 to 110780977 1129 CpG island CpG island 16236
Tssr52525 5 110779937 to 110779943 6 - TSS region transcription start site region 52525
Gm26515 5 110780057 to 110781064 1007 + lincRNA gene predicted gene, 26515
Tssr52526 5 110780534 to 110780551 17 - TSS region transcription start site region 52526
Tssr52527 5 110780569 to 110780626 57 - TSS region transcription start site region 52527
Ulk1 5 110784488 to 110810097 25609 - protein coding gene unc-51 like kinase 1
Tssr52528 5 110808417 to 110808464 47 - TSS region transcription start site region 52528
Tssr1587 5 110808574 to 110808585 11 + TSS region transcription start site region 1587
Cpgi16237 5 110809212 to 110810583 1371 CpG island CpG island 16237
Tssr52529 5 110810018 to 110810027 9 - TSS region transcription start site region 52529
Tssr52530 5 110810043 to 110810062 19 - TSS region transcription start site region 52530
Tssr52531 5 110810068 to 110810075 7 - TSS region transcription start site region 52531
Tssr52532 5 110810080 to 110810113 33 - TSS region transcription start site region 52532
Tssr52533 5 110810115 to 110810133 18 - TSS region transcription start site region 52533
Tssr47909 5 110810307 to 110810327 20 + TSS region transcription start site region 47909
Hscb 5 110829070 to 110839777 10707 - protein coding gene HscB iron-sulfur cluster co-chaperone
Tssr52534 5 110836040 to 110836063 23 - TSS region transcription start site region 52534
Cpgi16238 5 110839308 to 110840326 1018 CpG island CpG island 16238
Tssr52535 5 110839720 to 110839734 14 - TSS region transcription start site region 52535
Tssr52536 5 110839739 to 110839756 17 - TSS region transcription start site region 52536
Tssr52537 5 110839757 to 110839786 29 - TSS region transcription start site region 52537
Tssr47910 5 110839973 to 110840022 49 + TSS region transcription start site region 47910
Chek2 5 110839979 to 110874145 34166 + protein coding gene checkpoint kinase 2
Tssr47911 5 110840231 to 110840283 52 + TSS region transcription start site region 47911
Tssr47912 5 110867886 to 110867914 28 + TSS region transcription start site region 47912
Tssr1588 5 110867930 to 110867938 8 + TSS region transcription start site region 1588
Gm42779 5 110876603 to 110877273 670 + pseudogene predicted gene 42779
Cpgi16239 5 110879388 to 110880472 1084 CpG island CpG island 16239
Tssr47913 5 110879788 to 110879842 54 + TSS region transcription start site region 47913
Ttc28 5 110879803 to 111289780 409977 + protein coding gene tetratricopeptide repeat domain 28
Tssr47914 5 110879846 to 110879887 41 + TSS region transcription start site region 47914
Tssr47915 5 110879926 to 110879941 15 + TSS region transcription start site region 47915
Tssr47916 5 110895205 to 110895241 36 + TSS region transcription start site region 47916
Tssr47917 5 110895270 to 110895304 34 + TSS region transcription start site region 47917
Tssr47918 5 110898566 to 110898571 5 + TSS region transcription start site region 47918
Gm15989 5 110905244 to 110905741 497 + pseudogene predicted gene 15989
Tssr47919 5 110906397 to 110906406 9 + TSS region transcription start site region 47919
Tssr47920 5 110906477 to 110906491 14 + TSS region transcription start site region 47920
Tssr47921 5 110906573 to 110906588 15 + TSS region transcription start site region 47921
Gm35973 5 110930102 to 110943879 13777 + lncRNA gene predicted gene, 35973
Tssr47922 5 110956078 to 110956081 3 + TSS region transcription start site region 47922
Tssr47923 5 110978656 to 110978676 20 + TSS region transcription start site region 47923
Gm42778 5 110978665 to 110979217 552 + unclassified gene predicted gene 42778
Cpgi16240 5 110978972 to 110980392 1420 CpG island CpG island 16240
Tssr47924 5 110990682 to 110990685 3 + TSS region transcription start site region 47924
Mir701 5 111004144 to 111004252 108 + miRNA gene microRNA 701
Gm15988 5 111008480 to 111008846 366 - pseudogene predicted gene 15988
D5Dcr53 5 111021843 to 111021938 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 53
Gm42780 5 111028552 to 111029285 733 + unclassified gene predicted gene 42780
Cpgi16241 5 111058446 to 111058648 202 CpG island CpG island 16241
Tssr47925 5 111104808 to 111104811 3 + TSS region transcription start site region 47925
8430408J09Rik 5 111109401 to 111111122 1721 unclassified gene RIKEN cDNA 8430408J09 gene
Tssr47926 5 111116381 to 111116384 3 + TSS region transcription start site region 47926
Tssr47927 5 111124088 to 111124099 11 + TSS region transcription start site region 47927
Tssr47928 5 111139931 to 111139935 4 + TSS region transcription start site region 47928
Gm43677 5 111158311 to 111160688 2377 + unclassified gene predicted gene 43677
Tssr52538 5 111178658 to 111178670 12 - TSS region transcription start site region 52538
Gm43676 5 111197140 to 111197679 539 + unclassified gene predicted gene 43676
Cpgi16242 5 111201525 to 111201765 240 CpG island CpG island 16242
Gm35628 5 111232466 to 111233239 773 - lncRNA gene predicted gene, 35628
Tssr52539 5 111234692 to 111234699 7 - TSS region transcription start site region 52539
Tssr47929 5 111235352 to 111235374 22 + TSS region transcription start site region 47929
Gm27602 5 111274984 to 111275094 110 - unclassified non-coding RNA gene predicted gene, 27602
Tssr47930 5 111287365 to 111287376 11 + TSS region transcription start site region 47930
Tssr47931 5 111289203 to 111289214 11 + TSS region transcription start site region 47931
Cpgi16243 5 111330273 to 111331338 1065 CpG island CpG island 16243
Gm27680 5 111330473 to 111330632 159 - unclassified non-coding RNA gene predicted gene, 27680
Tssr47932 5 111330742 to 111330768 26 + TSS region transcription start site region 47932
Pitpnb 5 111330763 to 111388359 57596 + protein coding gene phosphatidylinositol transfer protein, beta
Gm36027 5 111357620 to 111363480 5860 + lncRNA gene predicted gene, 36027
Tssr1589 5 111380208 to 111380231 23 + TSS region transcription start site region 1589
Gm43118 5 111387515 to 111388289 774 - antisense lncRNA gene predicted gene 43118
Gm10405 5 111392059 to 111395732 3673 unclassified gene predicted gene 10405
Cpgi16244 5 111416190 to 111421745 5555 CpG island CpG island 16244
Tssr47933 5 111416609 to 111416619 10 + TSS region transcription start site region 47933
Tssr52540 5 111417125 to 111417138 13 - TSS region transcription start site region 52540
Tssr52541 5 111417140 to 111417159 19 - TSS region transcription start site region 52541
Tssr47934 5 111417263 to 111417306 43 + TSS region transcription start site region 47934
Tssr47935 5 111417317 to 111417319 2 + TSS region transcription start site region 47935
Tssr47936 5 111417759 to 111417770 11 + TSS region transcription start site region 47936
Mn1 5 111418166 to 111457025 38859 + protein coding gene meningioma 1
Tssr47937 5 111418186 to 111418203 17 + TSS region transcription start site region 47937
Tssr47938 5 111418221 to 111418233 12 + TSS region transcription start site region 47938
Tssr47939 5 111418253 to 111418268 15 + TSS region transcription start site region 47939
Tssr47940 5 111418651 to 111418662 11 + TSS region transcription start site region 47940
Tssr47941 5 111418708 to 111418715 7 + TSS region transcription start site region 47941
Tssr47942 5 111419014 to 111419061 47 + TSS region transcription start site region 47942
Tssr47943 5 111420160 to 111420188 28 + TSS region transcription start site region 47943
Tssr47944 5 111420249 to 111420260 11 + TSS region transcription start site region 47944
Gm43119 5 111423589 to 111425710 2121 + unclassified gene predicted gene 43119
D5Dcr54 5 111429038 to 111429134 96 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 54
Tssr47945 5 111429217 to 111429267 50 + TSS region transcription start site region 47945
Cpgi16245 5 111432080 to 111432405 325 CpG island CpG island 16245
Cpgi16246 5 111434179 to 111434444 265 CpG island CpG island 16246
Tssr47946 5 111454914 to 111454918 4 + TSS region transcription start site region 47946
Gm42155 5 111468194 to 111470848 2654 + lncRNA gene predicted gene, 42155
Gm42154 5 111470741 to 111474215 3474 - lncRNA gene predicted gene, 42154
Gm36149 5 111490881 to 111492624 1743 + lncRNA gene predicted gene, 36149
Tssr47947 5 111490921 to 111490958 37 + TSS region transcription start site region 47947
Gm36223 5 111509276 to 111512271 2995 + lncRNA gene predicted gene, 36223
Cpgi16247 5 111509353 to 111509813 460 CpG island CpG island 16247
Tssr1590 5 111509384 to 111509397 13 + TSS region transcription start site region 1590
Gm36274 5 111557220 to 111562132 4912 - lncRNA gene predicted gene, 36274
C130026L21Rik 5 111581561 to 111587153 5592 + lincRNA gene RIKEN cDNA C130026L21 gene
Gm42489 5 111593616 to 111594284 668 + lincRNA gene predicted gene 42489
Tssr52542 5 111594240 to 111594249 9 - TSS region transcription start site region 52542
Tssr1591 5 111630459 to 111630460 1 + TSS region transcription start site region 1591