Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:110463444-110843482

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr47896 5 110467234 to 110467261 27 + TSS region transcription start site region 47896
Tssr52512 5 110471297 to 110471324 27 - TSS region transcription start site region 52512
Cpgi16231 5 110480662 to 110481852 1190 CpG island CpG island 16231
Gm32996 5 110480755 to 110482201 1446 - pseudogene predicted gene, 32996
Tssr47897 5 110514857 to 110514879 22 + TSS region transcription start site region 47897
Tssr47898 5 110514885 to 110514931 46 + TSS region transcription start site region 47898
A630023P12Rik 5 110514923 to 110525980 11057 + lincRNA gene RIKEN cDNA A630023P12 gene
Tssr47899 5 110514934 to 110514949 15 + TSS region transcription start site region 47899
Cpgi16232 5 110543903 to 110545363 1460 CpG island CpG island 16232
Tssr47900 5 110544297 to 110544314 17 + TSS region transcription start site region 47900
Tssr47901 5 110544326 to 110544370 44 + TSS region transcription start site region 47901
Galnt9 5 110544355 to 110621380 77025 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 9
Tssr47902 5 110544375 to 110544400 25 + TSS region transcription start site region 47902
Tssr47903 5 110565583 to 110565592 9 + TSS region transcription start site region 47903
Tssr47904 5 110594780 to 110594815 35 + TSS region transcription start site region 47904
Tssr47905 5 110597687 to 110597691 4 + TSS region transcription start site region 47905
Tssr47906 5 110603496 to 110603528 32 + TSS region transcription start site region 47906
Cpgi16233 5 110628203 to 110628456 253 CpG island CpG island 16233
Tssr47907 5 110630053 to 110630061 8 + TSS region transcription start site region 47907
Noc4l 5 110648419 to 110653382 4963 - protein coding gene NOC4 like
Cpgi16234 5 110652684 to 110654052 1368 CpG island CpG island 16234
Tssr52513 5 110653128 to 110653137 9 - TSS region transcription start site region 52513
Tssr52514 5 110653348 to 110653422 74 - TSS region transcription start site region 52514
Tssr47908 5 110653444 to 110653482 38 + TSS region transcription start site region 47908
Ddx51 5 110653451 to 110660496 7045 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
Gm42595 5 110661392 to 110662998 1606 + lincRNA gene predicted gene 42595
Ep400 5 110664373 to 110770717 106344 - protein coding gene E1A binding protein p400
Mir7026 5 110666075 to 110666141 66 - miRNA gene microRNA 7026
Gm22716 5 110677124 to 110677230 106 - snRNA gene predicted gene, 22716
Tssr52515 5 110682157 to 110682163 6 - TSS region transcription start site region 52515
Gm26079 5 110692049 to 110692181 132 - snoRNA gene predicted gene, 26079
Tssr52516 5 110729876 to 110729905 29 - TSS region transcription start site region 52516
Gm22583 5 110757085 to 110757191 106 + snRNA gene predicted gene, 22583
Tssr52517 5 110762458 to 110762461 3 - TSS region transcription start site region 52517
Cpgi16235 5 110769790 to 110771210 1420 CpG island CpG island 16235
Tssr52518 5 110770132 to 110770173 41 - TSS region transcription start site region 52518
Tssr52519 5 110770176 to 110770187 11 - TSS region transcription start site region 52519
Tssr52520 5 110770202 to 110770211 9 - TSS region transcription start site region 52520
Tssr52521 5 110770560 to 110770629 69 - TSS region transcription start site region 52521
Tssr52522 5 110770710 to 110770723 13 - TSS region transcription start site region 52522
Tssr52523 5 110770858 to 110770923 65 - TSS region transcription start site region 52523
Gm15559 5 110770888 to 110778874 7986 + antisense lncRNA gene predicted gene 15559
Tssr52524 5 110772845 to 110772847 2 - TSS region transcription start site region 52524
Pus1 5 110773667 to 110780659 6992 - protein coding gene pseudouridine synthase 1
Cpgi16236 5 110779848 to 110780977 1129 CpG island CpG island 16236
Tssr52525 5 110779937 to 110779943 6 - TSS region transcription start site region 52525
Gm26515 5 110780057 to 110781064 1007 + lincRNA gene predicted gene, 26515
Tssr52526 5 110780534 to 110780551 17 - TSS region transcription start site region 52526
Tssr52527 5 110780569 to 110780626 57 - TSS region transcription start site region 52527
Ulk1 5 110784488 to 110810097 25609 - protein coding gene unc-51 like kinase 1
Tssr52528 5 110808417 to 110808464 47 - TSS region transcription start site region 52528
Tssr1587 5 110808574 to 110808585 11 + TSS region transcription start site region 1587
Cpgi16237 5 110809212 to 110810583 1371 CpG island CpG island 16237
Tssr52529 5 110810018 to 110810027 9 - TSS region transcription start site region 52529
Tssr52530 5 110810043 to 110810062 19 - TSS region transcription start site region 52530
Tssr52531 5 110810068 to 110810075 7 - TSS region transcription start site region 52531
Tssr52532 5 110810080 to 110810113 33 - TSS region transcription start site region 52532
Tssr52533 5 110810115 to 110810133 18 - TSS region transcription start site region 52533
Tssr47909 5 110810307 to 110810327 20 + TSS region transcription start site region 47909
Hscb 5 110829070 to 110839777 10707 - protein coding gene HscB iron-sulfur cluster co-chaperone
Tssr52534 5 110836040 to 110836063 23 - TSS region transcription start site region 52534
Cpgi16238 5 110839308 to 110840326 1018 CpG island CpG island 16238
Tssr52535 5 110839720 to 110839734 14 - TSS region transcription start site region 52535
Tssr52536 5 110839739 to 110839756 17 - TSS region transcription start site region 52536
Tssr52537 5 110839757 to 110839786 29 - TSS region transcription start site region 52537
Tssr47910 5 110839973 to 110840022 49 + TSS region transcription start site region 47910
Chek2 5 110839979 to 110874145 34166 + protein coding gene checkpoint kinase 2
Tssr47911 5 110840231 to 110840283 52 + TSS region transcription start site region 47911