Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:110399297-110689314

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Fbrsl1 5 110361754 to 110448503 86749 - protein coding gene fibrosin-like 1
D630050G16Rik 5 110402128 to 110404033 1905 unclassified gene RIKEN cDNA D630050G16 gene
Tssr1585 5 110446912 to 110446913 1 + TSS region transcription start site region 1585
Cpgi16230 5 110447286 to 110449206 1920 CpG island CpG island 16230
Tssr1586 5 110447967 to 110447969 2 + TSS region transcription start site region 1586
Gm42596 5 110447989 to 110449946 1957 + antisense lncRNA gene predicted gene 42596
Tssr47895 5 110448341 to 110448357 16 + TSS region transcription start site region 47895
Tssr52508 5 110448439 to 110448454 15 - TSS region transcription start site region 52508
Tssr52509 5 110448472 to 110448481 9 - TSS region transcription start site region 52509
Tssr52510 5 110448486 to 110448519 33 - TSS region transcription start site region 52510
Tssr52511 5 110448521 to 110448532 11 - TSS region transcription start site region 52511
Tssr47896 5 110467234 to 110467261 27 + TSS region transcription start site region 47896
Tssr52512 5 110471297 to 110471324 27 - TSS region transcription start site region 52512
Cpgi16231 5 110480662 to 110481852 1190 CpG island CpG island 16231
Gm32996 5 110480755 to 110482201 1446 - pseudogene predicted gene, 32996
Tssr47897 5 110514857 to 110514879 22 + TSS region transcription start site region 47897
Tssr47898 5 110514885 to 110514931 46 + TSS region transcription start site region 47898
A630023P12Rik 5 110514923 to 110525980 11057 + lincRNA gene RIKEN cDNA A630023P12 gene
Tssr47899 5 110514934 to 110514949 15 + TSS region transcription start site region 47899
Cpgi16232 5 110543903 to 110545363 1460 CpG island CpG island 16232
Tssr47900 5 110544297 to 110544314 17 + TSS region transcription start site region 47900
Tssr47901 5 110544326 to 110544370 44 + TSS region transcription start site region 47901
Galnt9 5 110544355 to 110621380 77025 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 9
Tssr47902 5 110544375 to 110544400 25 + TSS region transcription start site region 47902
Tssr47903 5 110565583 to 110565592 9 + TSS region transcription start site region 47903
Tssr47904 5 110594780 to 110594815 35 + TSS region transcription start site region 47904
Tssr47905 5 110597687 to 110597691 4 + TSS region transcription start site region 47905
Tssr47906 5 110603496 to 110603528 32 + TSS region transcription start site region 47906
Cpgi16233 5 110628203 to 110628456 253 CpG island CpG island 16233
Tssr47907 5 110630053 to 110630061 8 + TSS region transcription start site region 47907
Noc4l 5 110648419 to 110653382 4963 - protein coding gene NOC4 like
Cpgi16234 5 110652684 to 110654052 1368 CpG island CpG island 16234
Tssr52513 5 110653128 to 110653137 9 - TSS region transcription start site region 52513
Tssr52514 5 110653348 to 110653422 74 - TSS region transcription start site region 52514
Tssr47908 5 110653444 to 110653482 38 + TSS region transcription start site region 47908
Ddx51 5 110653451 to 110660496 7045 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
Gm42595 5 110661392 to 110662998 1606 + lincRNA gene predicted gene 42595
Ep400 5 110664373 to 110770717 106344 - protein coding gene E1A binding protein p400
Mir7026 5 110666075 to 110666141 66 - miRNA gene microRNA 7026
Gm22716 5 110677124 to 110677230 106 - snRNA gene predicted gene, 22716
Tssr52515 5 110682157 to 110682163 6 - TSS region transcription start site region 52515