Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:110325057-111236064

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142 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pole 5 110286319 to 110337468 51149 + protein coding gene polymerase (DNA directed), epsilon
Tssr47887 5 110327643 to 110327652 9 + TSS region transcription start site region 47887
Gm26277 5 110328032 to 110328183 151 + snoRNA gene predicted gene, 26277
Gm15791 5 110328204 to 110328522 318 + pseudogene predicted gene 15791
Tssr1584 5 110330692 to 110330701 9 + TSS region transcription start site region 1584
Tssr47888 5 110330756 to 110330767 11 + TSS region transcription start site region 47888
Gm15792 5 110331206 to 110333203 1997 - antisense lncRNA gene predicted gene 15792
P2rx2 5 110339812 to 110343212 3400 - protein coding gene purinergic receptor P2X, ligand-gated ion channel, 2
Cpgi16227 5 110342218 to 110343133 915 CpG island CpG island 16227
Tssr52503 5 110342963 to 110343007 44 - TSS region transcription start site region 52503
Tssr52504 5 110343009 to 110343039 30 - TSS region transcription start site region 52504
Tssr47889 5 110343116 to 110343119 3 + TSS region transcription start site region 47889
Tssr47890 5 110344561 to 110344570 9 + TSS region transcription start site region 47890
Tssr47891 5 110344699 to 110344710 11 + TSS region transcription start site region 47891
Tssr47892 5 110344712 to 110344734 22 + TSS region transcription start site region 47892
Lrcol1 5 110344730 to 110356094 11364 + protein coding gene leucine rich colipase-like 1
Tssr47893 5 110344740 to 110344753 13 + TSS region transcription start site region 47893
Tssr47894 5 110344776 to 110344782 6 + TSS region transcription start site region 47894
Fbrsl1 5 110361754 to 110448503 86749 - protein coding gene fibrosin-like 1
Cpgi16228 5 110362903 to 110363893 990 CpG island CpG island 16228
A330095P18Rik 5 110368569 to 110370227 1658 unclassified gene RIKEN cDNA A330095P18 gene
Tssr52505 5 110378140 to 110378177 37 - TSS region transcription start site region 52505
Gm26711 5 110385835 to 110388073 2238 + lincRNA gene predicted gene, 26711
Cpgi16229 5 110386205 to 110387571 1366 CpG island CpG island 16229
Tssr52506 5 110387090 to 110387154 64 - TSS region transcription start site region 52506
Tssr52507 5 110387173 to 110387174 1 - TSS region transcription start site region 52507
D630050G16Rik 5 110402128 to 110404033 1905 unclassified gene RIKEN cDNA D630050G16 gene
Tssr1585 5 110446912 to 110446913 1 + TSS region transcription start site region 1585
Cpgi16230 5 110447286 to 110449206 1920 CpG island CpG island 16230
Tssr1586 5 110447967 to 110447969 2 + TSS region transcription start site region 1586
Gm42596 5 110447989 to 110449946 1957 + antisense lncRNA gene predicted gene 42596
Tssr47895 5 110448341 to 110448357 16 + TSS region transcription start site region 47895
Tssr52508 5 110448439 to 110448454 15 - TSS region transcription start site region 52508
Tssr52509 5 110448472 to 110448481 9 - TSS region transcription start site region 52509
Tssr52510 5 110448486 to 110448519 33 - TSS region transcription start site region 52510
Tssr52511 5 110448521 to 110448532 11 - TSS region transcription start site region 52511
Tssr47896 5 110467234 to 110467261 27 + TSS region transcription start site region 47896
Tssr52512 5 110471297 to 110471324 27 - TSS region transcription start site region 52512
Cpgi16231 5 110480662 to 110481852 1190 CpG island CpG island 16231
Gm32996 5 110480755 to 110482201 1446 - pseudogene predicted gene, 32996
Tssr47897 5 110514857 to 110514879 22 + TSS region transcription start site region 47897
Tssr47898 5 110514885 to 110514931 46 + TSS region transcription start site region 47898
A630023P12Rik 5 110514923 to 110525980 11057 + lincRNA gene RIKEN cDNA A630023P12 gene
Tssr47899 5 110514934 to 110514949 15 + TSS region transcription start site region 47899
Cpgi16232 5 110543903 to 110545363 1460 CpG island CpG island 16232
Tssr47900 5 110544297 to 110544314 17 + TSS region transcription start site region 47900
Tssr47901 5 110544326 to 110544370 44 + TSS region transcription start site region 47901
Galnt9 5 110544355 to 110621380 77025 + protein coding gene polypeptide N-acetylgalactosaminyltransferase 9
Tssr47902 5 110544375 to 110544400 25 + TSS region transcription start site region 47902
Tssr47903 5 110565583 to 110565592 9 + TSS region transcription start site region 47903
Tssr47904 5 110594780 to 110594815 35 + TSS region transcription start site region 47904
Tssr47905 5 110597687 to 110597691 4 + TSS region transcription start site region 47905
Tssr47906 5 110603496 to 110603528 32 + TSS region transcription start site region 47906
Cpgi16233 5 110628203 to 110628456 253 CpG island CpG island 16233
Tssr47907 5 110630053 to 110630061 8 + TSS region transcription start site region 47907
Noc4l 5 110648419 to 110653382 4963 - protein coding gene NOC4 like
Cpgi16234 5 110652684 to 110654052 1368 CpG island CpG island 16234
Tssr52513 5 110653128 to 110653137 9 - TSS region transcription start site region 52513
Tssr52514 5 110653348 to 110653422 74 - TSS region transcription start site region 52514
Tssr47908 5 110653444 to 110653482 38 + TSS region transcription start site region 47908
Ddx51 5 110653451 to 110660496 7045 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
Gm42595 5 110661392 to 110662998 1606 + lincRNA gene predicted gene 42595
Ep400 5 110664373 to 110770717 106344 - protein coding gene E1A binding protein p400
Mir7026 5 110666075 to 110666141 66 - miRNA gene microRNA 7026
Gm22716 5 110677124 to 110677230 106 - snRNA gene predicted gene, 22716
Tssr52515 5 110682157 to 110682163 6 - TSS region transcription start site region 52515
Gm26079 5 110692049 to 110692181 132 - snoRNA gene predicted gene, 26079
Tssr52516 5 110729876 to 110729905 29 - TSS region transcription start site region 52516
Gm22583 5 110757085 to 110757191 106 + snRNA gene predicted gene, 22583
Tssr52517 5 110762458 to 110762461 3 - TSS region transcription start site region 52517
Cpgi16235 5 110769790 to 110771210 1420 CpG island CpG island 16235
Tssr52518 5 110770132 to 110770173 41 - TSS region transcription start site region 52518
Tssr52519 5 110770176 to 110770187 11 - TSS region transcription start site region 52519
Tssr52520 5 110770202 to 110770211 9 - TSS region transcription start site region 52520
Tssr52521 5 110770560 to 110770629 69 - TSS region transcription start site region 52521
Tssr52522 5 110770710 to 110770723 13 - TSS region transcription start site region 52522
Tssr52523 5 110770858 to 110770923 65 - TSS region transcription start site region 52523
Gm15559 5 110770888 to 110778874 7986 + antisense lncRNA gene predicted gene 15559
Tssr52524 5 110772845 to 110772847 2 - TSS region transcription start site region 52524
Pus1 5 110773667 to 110780659 6992 - protein coding gene pseudouridine synthase 1
Cpgi16236 5 110779848 to 110780977 1129 CpG island CpG island 16236
Tssr52525 5 110779937 to 110779943 6 - TSS region transcription start site region 52525
Gm26515 5 110780057 to 110781064 1007 + lincRNA gene predicted gene, 26515
Tssr52526 5 110780534 to 110780551 17 - TSS region transcription start site region 52526
Tssr52527 5 110780569 to 110780626 57 - TSS region transcription start site region 52527
Ulk1 5 110784488 to 110810097 25609 - protein coding gene unc-51 like kinase 1
Tssr52528 5 110808417 to 110808464 47 - TSS region transcription start site region 52528
Tssr1587 5 110808574 to 110808585 11 + TSS region transcription start site region 1587
Cpgi16237 5 110809212 to 110810583 1371 CpG island CpG island 16237
Tssr52529 5 110810018 to 110810027 9 - TSS region transcription start site region 52529
Tssr52530 5 110810043 to 110810062 19 - TSS region transcription start site region 52530
Tssr52531 5 110810068 to 110810075 7 - TSS region transcription start site region 52531
Tssr52532 5 110810080 to 110810113 33 - TSS region transcription start site region 52532
Tssr52533 5 110810115 to 110810133 18 - TSS region transcription start site region 52533
Tssr47909 5 110810307 to 110810327 20 + TSS region transcription start site region 47909
Hscb 5 110829070 to 110839777 10707 - protein coding gene HscB iron-sulfur cluster co-chaperone
Tssr52534 5 110836040 to 110836063 23 - TSS region transcription start site region 52534
Cpgi16238 5 110839308 to 110840326 1018 CpG island CpG island 16238
Tssr52535 5 110839720 to 110839734 14 - TSS region transcription start site region 52535
Tssr52536 5 110839739 to 110839756 17 - TSS region transcription start site region 52536
Tssr52537 5 110839757 to 110839786 29 - TSS region transcription start site region 52537
Tssr47910 5 110839973 to 110840022 49 + TSS region transcription start site region 47910
Chek2 5 110839979 to 110874145 34166 + protein coding gene checkpoint kinase 2
Tssr47911 5 110840231 to 110840283 52 + TSS region transcription start site region 47911
Tssr47912 5 110867886 to 110867914 28 + TSS region transcription start site region 47912
Tssr1588 5 110867930 to 110867938 8 + TSS region transcription start site region 1588
Gm42779 5 110876603 to 110877273 670 + pseudogene predicted gene 42779
Cpgi16239 5 110879388 to 110880472 1084 CpG island CpG island 16239
Tssr47913 5 110879788 to 110879842 54 + TSS region transcription start site region 47913
Ttc28 5 110879803 to 111289780 409977 + protein coding gene tetratricopeptide repeat domain 28
Tssr47914 5 110879846 to 110879887 41 + TSS region transcription start site region 47914
Tssr47915 5 110879926 to 110879941 15 + TSS region transcription start site region 47915
Tssr47916 5 110895205 to 110895241 36 + TSS region transcription start site region 47916
Tssr47917 5 110895270 to 110895304 34 + TSS region transcription start site region 47917
Tssr47918 5 110898566 to 110898571 5 + TSS region transcription start site region 47918
Gm15989 5 110905244 to 110905741 497 + pseudogene predicted gene 15989
Tssr47919 5 110906397 to 110906406 9 + TSS region transcription start site region 47919
Tssr47920 5 110906477 to 110906491 14 + TSS region transcription start site region 47920
Tssr47921 5 110906573 to 110906588 15 + TSS region transcription start site region 47921
Gm35973 5 110930102 to 110943879 13777 + lncRNA gene predicted gene, 35973
Tssr47922 5 110956078 to 110956081 3 + TSS region transcription start site region 47922
Tssr47923 5 110978656 to 110978676 20 + TSS region transcription start site region 47923
Gm42778 5 110978665 to 110979217 552 + unclassified gene predicted gene 42778
Cpgi16240 5 110978972 to 110980392 1420 CpG island CpG island 16240
Tssr47924 5 110990682 to 110990685 3 + TSS region transcription start site region 47924
Mir701 5 111004144 to 111004252 108 + miRNA gene microRNA 701
Gm15988 5 111008480 to 111008846 366 - pseudogene predicted gene 15988
D5Dcr53 5 111021843 to 111021938 95 DNA segment DNA Segment, Chr 5, Derry C. Roopenian 53
Gm42780 5 111028552 to 111029285 733 + unclassified gene predicted gene 42780
Cpgi16241 5 111058446 to 111058648 202 CpG island CpG island 16241
Tssr47925 5 111104808 to 111104811 3 + TSS region transcription start site region 47925
8430408J09Rik 5 111109401 to 111111122 1721 unclassified gene RIKEN cDNA 8430408J09 gene
Tssr47926 5 111116381 to 111116384 3 + TSS region transcription start site region 47926
Tssr47927 5 111124088 to 111124099 11 + TSS region transcription start site region 47927
Tssr47928 5 111139931 to 111139935 4 + TSS region transcription start site region 47928
Gm43677 5 111158311 to 111160688 2377 + unclassified gene predicted gene 43677
Tssr52538 5 111178658 to 111178670 12 - TSS region transcription start site region 52538
Gm43676 5 111197140 to 111197679 539 + unclassified gene predicted gene 43676
Cpgi16242 5 111201525 to 111201765 240 CpG island CpG island 16242
Gm35628 5 111232466 to 111233239 773 - lncRNA gene predicted gene, 35628
Tssr52539 5 111234692 to 111234699 7 - TSS region transcription start site region 52539
Tssr47929 5 111235352 to 111235374 22 + TSS region transcription start site region 47929