Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.



Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:110236319-110387468

42 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Ankle2	5	110231004 to 110256651	25647	+	protein coding gene	ankyrin repeat and LEM domain containing 2
Tssr47883	5	110256002 to 110256014	12	+	TSS region	transcription start site region 47883
Pgam5	5	110259135 to 110269899	10764	-	protein coding gene	phosphoglycerate mutase family member 5
Gm26718	5	110259163 to 110269847	10684	+	lincRNA gene	predicted gene, 26718
Tssr47884	5	110261474 to 110261479	5	+	TSS region	transcription start site region 47884
Gm15788	5	110262161 to 110277267	15106	+	antisense lncRNA gene	predicted gene 15788
Cpgi16225	5	110269220 to 110270014	794		CpG island	CpG island 16225
Tssr52498	5	110269816 to 110269894	78	-	TSS region	transcription start site region 52498
Pxmp2	5	110274286 to 110286168	11882	-	protein coding gene	peroxisomal membrane protein 2
Cpgi16226	5	110285641 to 110286751	1110		CpG island	CpG island 16226
Tssr52499	5	110286010 to 110286028	18	-	TSS region	transcription start site region 52499
Tssr52500	5	110286043 to 110286052	9	-	TSS region	transcription start site region 52500
Tssr52501	5	110286146 to 110286155	9	-	TSS region	transcription start site region 52501
Tssr52502	5	110286159 to 110286177	18	-	TSS region	transcription start site region 52502
Pole	5	110286319 to 110337468	51149	+	protein coding gene	polymerase (DNA directed), epsilon
Tssr47885	5	110286326 to 110286391	65	+	TSS region	transcription start site region 47885
Tssr47886	5	110308801 to 110308806	5	+	TSS region	transcription start site region 47886
Tssr47887	5	110327643 to 110327652	9	+	TSS region	transcription start site region 47887
Gm26277	5	110328032 to 110328183	151	+	snoRNA gene	predicted gene, 26277
Gm15791	5	110328204 to 110328522	318	+	pseudogene	predicted gene 15791
Tssr1584	5	110330692 to 110330701	9	+	TSS region	transcription start site region 1584
Tssr47888	5	110330756 to 110330767	11	+	TSS region	transcription start site region 47888
Gm15792	5	110331206 to 110333203	1997	-	antisense lncRNA gene	predicted gene 15792
P2rx2	5	110339812 to 110343212	3400	-	protein coding gene	purinergic receptor P2X, ligand-gated ion channel, 2
Cpgi16227	5	110342218 to 110343133	915		CpG island	CpG island 16227
Tssr52503	5	110342963 to 110343007	44	-	TSS region	transcription start site region 52503
Tssr52504	5	110343009 to 110343039	30	-	TSS region	transcription start site region 52504
Tssr47889	5	110343116 to 110343119	3	+	TSS region	transcription start site region 47889
Tssr47890	5	110344561 to 110344570	9	+	TSS region	transcription start site region 47890
Tssr47891	5	110344699 to 110344710	11	+	TSS region	transcription start site region 47891
Tssr47892	5	110344712 to 110344734	22	+	TSS region	transcription start site region 47892
Lrcol1	5	110344730 to 110356094	11364	+	protein coding gene	leucine rich colipase-like 1
Tssr47893	5	110344740 to 110344753	13	+	TSS region	transcription start site region 47893
Tssr47894	5	110344776 to 110344782	6	+	TSS region	transcription start site region 47894
Fbrsl1	5	110361754 to 110448503	86749	-	protein coding gene	fibrosin-like 1
Cpgi16228	5	110362903 to 110363893	990		CpG island	CpG island 16228
A330095P18Rik	5	110368569 to 110370227	1658		unclassified gene	RIKEN cDNA A330095P18 gene
Tssr52505	5	110378140 to 110378177	37	-	TSS region	transcription start site region 52505
Gm26711	5	110385835 to 110388073	2238	+	lincRNA gene	predicted gene, 26711
Cpgi16229	5	110386205 to 110387571	1366		CpG island	CpG island 16229
Tssr52506	5	110387090 to 110387154	64	-	TSS region	transcription start site region 52506
Tssr52507	5	110387173 to 110387174	1	-	TSS region	transcription start site region 52507