Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 5:109557525-109957887

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Crlf2 5 109554709 to 109558993 4284 - protein coding gene cytokine receptor-like factor 2
Cpgi16214 5 109555309 to 109558004 2695 CpG island CpG island 16214
Tssr52474 5 109557799 to 109557805 6 - TSS region transcription start site region 52474
Cpgi16215 5 109558344 to 109559217 873 CpG island CpG island 16215
Tssr1582 5 109558907 to 109558922 15 - TSS region transcription start site region 1582
Tssr52475 5 109558945 to 109558956 11 - TSS region transcription start site region 52475
Tssr52476 5 109558957 to 109559014 57 - TSS region transcription start site region 52476
Vmn2r-ps22 5 109566230 to 109573269 7039 - pseudogene vomeronasal 2, receptor, pseudogene 22
Vmn2r-ps23 5 109578019 to 109578589 570 - pseudogene vomeronasal 2, receptor, pseudogene 23
Gm28000 5 109599079 to 109599163 84 + unclassified non-coding RNA gene predicted gene, 28000
Tssr47860 5 109600941 to 109600946 5 + TSS region transcription start site region 47860
5430403G16Rik 5 109674545 to 109691041 16496 - protein coding gene RIKEN cDNA 5430403G16 gene
D5Mit314 5 109682300 to 109682419 119 DNA segment DNA segment, Chr 5, Massachusetts Institute of Technology 314
Afw16 5 109682300 to 109682419 119 QTL abdominal fat weight QTL 16
Cpgi16216 5 109690646 to 109690843 197 CpG island CpG island 16216
Tssr52477 5 109690786 to 109690813 27 - TSS region transcription start site region 52477
Tssr52478 5 109690819 to 109690857 38 - TSS region transcription start site region 52478
4930522L14Rik 5 109735990 to 109751886 15896 - protein coding gene RIKEN cDNA 4930522L14 gene
Tssr52479 5 109751658 to 109751719 61 - TSS region transcription start site region 52479
Gm8508 5 109757525 to 109757887 362 - pseudogene predicted gene 8508
A430073D23Rik 5 109769407 to 109796298 26891 - lincRNA gene RIKEN cDNA A430073D23 gene
Cpgi16217 5 109795997 to 109796257 260 CpG island CpG island 16217
Tssr52480 5 109796270 to 109796286 16 - TSS region transcription start site region 52480
Gm10416 5 109833501 to 109834142 641 - pseudogene predicted pseudogene 10416
Tssr52481 5 109845002 to 109845009 7 - TSS region transcription start site region 52481
Tssr52482 5 109845018 to 109845058 40 - TSS region transcription start site region 52482
Gm35089 5 109859190 to 109866410 7220 - lncRNA gene predicted gene, 35089
Cpgi16218 5 109866510 to 109866810 300 CpG island CpG island 16218
AB010352 5 109866690 to 109885512 18822 + protein coding gene cDNA sequence AB010352
Tssr47861 5 109866701 to 109866747 46 + TSS region transcription start site region 47861
Gm26779 5 109886231 to 109891137 4906 + lincRNA gene predicted gene, 26779
Gm46918 5 109901577 to 109903696 2119 - protein coding gene predicted gene, 46918
Gm26808 5 109922649 to 109923481 832 - lincRNA gene predicted gene, 26808
Tssr47862 5 109923633 to 109923664 31 + TSS region transcription start site region 47862
Gm15446 5 109933563 to 109941710 8147 + protein coding gene predicted gene 15446